Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- mitochondrion 2
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra026434.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G17972.1 | Bra026434.1-P | AT4G26455.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY38164 | Canola | plastid | 100.0 | 100.0 |
| CDY56584 | Canola | plastid | 98.8 | 98.8 |
| AT2G17972.1 | Thale cress | plastid | 70.06 | 74.05 |
| PGSC0003DMT400009351 | Potato | plastid | 45.51 | 46.63 |
| Solyc02g083970.1.1 | Tomato | plastid | 44.31 | 45.96 |
| VIT_04s0023g03290.t01 | Wine grape | plastid | 46.11 | 43.26 |
| KRH69789 | Soybean | plastid | 44.91 | 42.37 |
| KRH08082 | Soybean | plastid | 43.11 | 40.22 |
| Zm00001d014781_P001 | Maize | plastid | 40.72 | 37.16 |
| EER88960 | Sorghum | plastid | 39.52 | 35.11 |
| TraesCS7B01G288600.1 | Wheat | mitochondrion, plasma membrane, plastid | 40.12 | 34.9 |
| TraesCS7D01G382300.1 | Wheat | mitochondrion, plasma membrane, plastid | 40.12 | 34.9 |
| TraesCS7A01G385700.1 | Wheat | mitochondrion | 39.52 | 34.38 |
| Os06t0715200-01 | Rice | plastid | 37.72 | 32.64 |
| HORVU7Hr1G091580.1 | Barley | cytosol, peroxisome, plastid | 39.52 | 32.04 |
Protein Annotations
| EnsemblPlants:Bra039904.1 | EnsemblPlants:Bra039904.1-P | EnsemblPlantsGene:Bra039904 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0009507 | GO:GO:0009535 | GO:GO:0009536 | GO:GO:0009579 | GO:GO:0016020 |
| GO:GO:0016021 | PANTHER:PTHR36347 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0002541190 | UniProt:M4FFN0 |
| MapMan:35.2 | : | : | : | : | : |
Description
AT2G17972 (E=2e-047) | unknown protein
Coordinates
chrA07:-:1746522..1747025
Molecular Weight (calculated)
18915.8 Da
IEP (calculated)
10.360
GRAVY (calculated)
-0.540
Length
167 amino acids
Sequence
(BLAST)
(BLAST)
001: MKTLHFLAPS SAKPTIIINP KQQSYGAITQ TQFVLRRQER RSLSINCSNS GNNNSSEEKV SQPLDGVEIR FKRGSRRRMR EEGSGEGQNG KKAEKTVQKT
101: WEEMTLNEKA LELYVGEKGL LFWLNKLAYA SIYIVIGGWI LFRFVGPALN LYQLDTPPLD PKNILKG
101: WEEMTLNEKA LELYVGEKGL LFWLNKLAYA SIYIVIGGWI LFRFVGPALN LYQLDTPPLD PKNILKG
001: MKSLHFLAPN STIINLKQQS YTKTKFQLHR SNRRTLSINC VNSGGDEEKI TQPLDGVEIR FKRGSRRKMR EEGSGEGGGQ SGKKKETVQK PWEEMTLNEK
101: ALELYVGEKG LLFWLNKLAY ASIYIVIGGW IFFRFVGPAF NLYQLDTPPL DPKNILKG
101: ALELYVGEKG LLFWLNKLAY ASIYIVIGGW IFFRFVGPAF NLYQLDTPPL DPKNILKG
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q8S8K0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.