Factsheet for Solyc02g083970.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc07g066170.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17972.1	Solyc07g066170.2.1	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400009351	Potato	plastid	93.79	92.64
VIT_04s0023g03290.t01	Wine grape	plastid	49.07	44.38
Bra039904.1-P	Field mustard	plastid	45.96	44.31
CDY38164	Canola	plastid	45.96	44.31
CDY56584	Canola	plastid	45.34	43.71
AT2G17972.1	Thale cress	plastid	42.24	43.04
KRH69789	Soybean	plastid	44.72	40.68
KRH08082	Soybean	plastid	44.72	40.22
Os06t0715200-01	Rice	plastid	42.86	35.75
TraesCS7A01G385700.1	Wheat	mitochondrion	42.24	35.42
TraesCS7D01G382300.1	Wheat	mitochondrion, plasma membrane, plastid	42.24	35.42
TraesCS7B01G288600.1	Wheat	mitochondrion, plasma membrane, plastid	41.61	34.9
EER88960	Sorghum	plastid	40.37	34.57
Zm00001d014781_P001	Maize	plastid	38.51	33.88
HORVU7Hr1G091580.1	Barley	cytosol, peroxisome, plastid	42.24	33.01

Protein Annotations

EnsemblPlants:Solyc02g083970.1.1	EnsemblPlantsGene:Solyc02g083970.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR36347	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002768893	UniProt:K4BAR5	MapMan:35.2

Description

No Description!

Coordinates

chr2:+:47210834..47211319

Molecular Weight (calculated)

18456.3 Da

IEP (calculated)

10.320

GRAVY (calculated)

-0.553

Length

161 amino acids

Sequence
(BLAST)

001: MNTTMLSTYP KHFTPLPVQL FSKSQHRHVI RFPIKCNSSS SSDNGNESQP NTVEIRIRRR PSKRQRQKEE EMINAGKQAV KPKPPPKDWE SMNLTEKAIE
101: LYVGEKGLLF WLNKFAYASI FIIIGGWILF RFVGPAFDLY QLDTPTPLAP ESMFKGTGDK P

Best Arabidopsis Sequence Match ( AT2G17972.1 )
(BLAST)

001: MKSLHFLAPN STIINLKQQS YTKTKFQLHR SNRRTLSINC VNSGGDEEKI TQPLDGVEIR FKRGSRRKMR EEGSGEGGGQ SGKKKETVQK PWEEMTLNEK
101: ALELYVGEKG LLFWLNKLAY ASIYIVIGGW IFFRFVGPAF NLYQLDTPPL DPKNILKG

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q8S8K0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.