Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 9
- cytosol 1
- nucleus 1
- plasma membrane 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_19s0015g01790.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G17972.1 | VIT_19s0015g01790.t01 | AT4G26455.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400009351 | Potato | plastid | 46.63 | 50.92 |
| Solyc02g083970.1.1 | Tomato | plastid | 44.38 | 49.07 |
| Bra039904.1-P | Field mustard | plastid | 43.26 | 46.11 |
| CDY38164 | Canola | plastid | 43.26 | 46.11 |
| CDY56584 | Canola | plastid | 42.7 | 45.51 |
| KRH08082 | Soybean | plastid | 44.94 | 44.69 |
| KRH69789 | Soybean | plastid | 43.26 | 43.5 |
| AT2G17972.1 | Thale cress | plastid | 37.08 | 41.77 |
| TraesCS7A01G385700.1 | Wheat | mitochondrion | 41.01 | 38.02 |
| TraesCS7B01G288600.1 | Wheat | mitochondrion, plasma membrane, plastid | 40.45 | 37.5 |
| TraesCS7D01G382300.1 | Wheat | mitochondrion, plasma membrane, plastid | 40.45 | 37.5 |
| Os06t0715200-01 | Rice | plastid | 39.89 | 36.79 |
| HORVU7Hr1G091580.1 | Barley | cytosol, peroxisome, plastid | 42.13 | 36.41 |
| EER88960 | Sorghum | plastid | 37.08 | 35.11 |
| Zm00001d014781_P001 | Maize | plastid | 35.96 | 34.97 |
Protein Annotations
| ArrayExpress:VIT_04s0023g03290 | EMBL:FN594959 | EnsemblPlants:VIT_04s0023g03290.t01 | EnsemblPlantsGene:VIT_04s0023g03290 | EntrezGene:104879130 | GO:GO:0005575 |
| GO:GO:0016020 | GO:GO:0016021 | PANTHER:PTHR36347 | ProteinID:CCB44369 | ProteinID:CCB44369.1 | RefSeq:XP_010649047.1 |
| SEG:seg | TMHMM:TMhelix | unigene:Vvi.993 | UniParc:UPI00015CB44F | UniProt:F6GWN4 | MapMan:35.2 |
Description
No Description!
Coordinates
chr4:-:19827675..19828334
Molecular Weight (calculated)
19659.8 Da
IEP (calculated)
10.550
GRAVY (calculated)
-0.193
Length
178 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMETNLLQI PFLYSKSSSS SSPILSLTKP HLQIFIRSQP HRLRSLTVTP INSSSSSDVP PPVPPPVTPP ETVEIRFRRG SKKRRQMQQQ DGGVANKAAE
101: ASSTTPPPKD WKDMSITEKA IELYVGEKGA LFWLNKFAYA SIFIVIGAWI LFRFVGPALN LYQLDSAPLS PSSLFKGS
101: ASSTTPPPKD WKDMSITEKA IELYVGEKGA LFWLNKFAYA SIFIVIGAWI LFRFVGPALN LYQLDSAPLS PSSLFKGS
001: MKSLHFLAPN STIINLKQQS YTKTKFQLHR SNRRTLSINC VNSGGDEEKI TQPLDGVEIR FKRGSRRKMR EEGSGEGGGQ SGKKKETVQK PWEEMTLNEK
101: ALELYVGEKG LLFWLNKLAY ASIYIVIGGW IFFRFVGPAF NLYQLDTPPL DPKNILKG
101: ALELYVGEKG LLFWLNKLAY ASIYIVIGGW IFFRFVGPAF NLYQLDTPPL DPKNILKG
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q8S8K0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.