Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 3
- cytosol 1
- mitochondrion 2
- plasma membrane 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os04t0471300-01 | |
| Os08t0497900-01 | |
| Os09t0481300-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G17972.1 | Os04t0471300-01 | AT4G26455.1 | 21798944 |
| AT2G17972.1 | Os08t0497900-01 | AT4G26455.1 | 21798944 |
| AT2G17972.1 | Os09t0481300-01 | AT4G26455.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER88960 | Sorghum | plastid | 59.59 | 61.17 |
| Zm00001d014781_P001 | Maize | plastid | 57.51 | 60.66 |
| TraesCS7A01G385700.1 | Wheat | mitochondrion | 56.48 | 56.77 |
| TraesCS7B01G288600.1 | Wheat | mitochondrion, plasma membrane, plastid | 56.48 | 56.77 |
| TraesCS7D01G382300.1 | Wheat | mitochondrion, plasma membrane, plastid | 55.96 | 56.25 |
| HORVU7Hr1G091580.1 | Barley | cytosol, peroxisome, plastid | 55.44 | 51.94 |
| Solyc02g083970.1.1 | Tomato | plastid | 35.75 | 42.86 |
| PGSC0003DMT400009351 | Potato | plastid | 35.75 | 42.33 |
| VIT_04s0023g03290.t01 | Wine grape | plastid | 36.79 | 39.89 |
| KRH69789 | Soybean | plastid | 35.23 | 38.42 |
| Bra039904.1-P | Field mustard | plastid | 32.64 | 37.72 |
| CDY38164 | Canola | plastid | 32.64 | 37.72 |
| CDY56584 | Canola | plastid | 32.64 | 37.72 |
| KRH08082 | Soybean | plastid | 34.2 | 36.87 |
| AT2G17972.1 | Thale cress | plastid | 30.05 | 36.71 |
Protein Annotations
| MapMan:35.2 | EntrezGene:4342069 | EMBL:AK066293 | ProteinID:BAD53574.1 | ProteinID:BAF20496.1 | ProteinID:BAS99494.1 |
| ProteinID:EAZ38280.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0009507 |
| GO:GO:0009535 | GO:GO:0009536 | GO:GO:0009579 | GO:GO:0016020 | GO:GO:0016021 | EnsemblPlantsGene:Os06g0715200 |
| EnsemblPlants:Os06t0715200-01 | PANTHER:PTHR36347 | UniProt:Q5Z9P9 | TMHMM:TMhelix | UniParc:UPI0000446DBD | RefSeq:XP_015642688.1 |
| SEG:seg | : | : | : | : | : |
Description
Conserved hypothetical protein. (Os06t0715200-01)
Coordinates
chr6:+:30362750..30363592
Molecular Weight (calculated)
20931.2 Da
IEP (calculated)
11.385
GRAVY (calculated)
-0.380
Length
193 amino acids
Sequence
(BLAST)
(BLAST)
001: MEHLLLPLLP HRPSQPLLLL LRHRRRPSIP RASSGDPSPT AADAPTDAQS ATPPSSGAKP TGVKNRLRAR NQARRVQEFT PPAPLGITMK SKSSSSSRPA
101: ASKSSASASA SAATRREKQT RRKEWEEMSM AEKAGELYVG EKGLLFWLNK FAYASIFIMV GAWILFRFVG PSIGLYQLDA PPLAPTDVFA GSP
101: ASKSSASASA SAATRREKQT RRKEWEEMSM AEKAGELYVG EKGLLFWLNK FAYASIFIMV GAWILFRFVG PSIGLYQLDA PPLAPTDVFA GSP
001: MKSLHFLAPN STIINLKQQS YTKTKFQLHR SNRRTLSINC VNSGGDEEKI TQPLDGVEIR FKRGSRRKMR EEGSGEGGGQ SGKKKETVQK PWEEMTLNEK
101: ALELYVGEKG LLFWLNKLAY ASIYIVIGGW IFFRFVGPAF NLYQLDTPPL DPKNILKG
101: ALELYVGEKG LLFWLNKLAY ASIYIVIGGW IFFRFVGPAF NLYQLDTPPL DPKNILKG
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q8S8K0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.