CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX89333
CDX94330

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17972.1	CDX89333	AT4G26455.1	21798944
AT2G17972.1	CDX94330	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039904.1-P	Field mustard	plastid	98.8	98.8
CDY38164	Canola	plastid	98.8	98.8
AT2G17972.1	Thale cress	plastid	70.06	74.05
PGSC0003DMT400009351	Potato	plastid	44.91	46.01
Solyc02g083970.1.1	Tomato	plastid	43.71	45.34
VIT_04s0023g03290.t01	Wine grape	plastid	45.51	42.7
KRH69789	Soybean	plastid	44.31	41.81
KRH08082	Soybean	plastid	43.11	40.22
Zm00001d014781_P001	Maize	plastid	41.32	37.7
TraesCS7B01G288600.1	Wheat	mitochondrion, plasma membrane, plastid	40.12	34.9
TraesCS7D01G382300.1	Wheat	mitochondrion, plasma membrane, plastid	40.12	34.9
EER88960	Sorghum	plastid	38.92	34.57
TraesCS7A01G385700.1	Wheat	mitochondrion	39.52	34.38
Os06t0715200-01	Rice	plastid	37.72	32.64
HORVU7Hr1G091580.1	Barley	cytosol, peroxisome, plastid	39.52	32.04

Protein Annotations

EnsemblPlants:CDY56584	EnsemblPlantsGene:GSBRNA2T00019765001	GO:A0A078J0P3	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR36347	ProteinID:CDY56584	ProteinID:CDY56584.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EE54E9
UniProt:A0A078J0P3	MapMan:35.2	:	:	:	:

Description

BnaC07g48100DBnaC07g48100D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J0P3]

Coordinates

chrLK033502:+:21313..21816

Molecular Weight (calculated)

18959.9 Da

IEP (calculated)

10.360

GRAVY (calculated)

-0.493

Length

167 amino acids

Sequence
(BLAST)

001: MKTLHFLAPS SAKPTIIINL KQQSYGAITQ TQFVLRRQER RSLSINCSNS GNNNSSEEKV SQPLDGVEIR FKRGSRRRMR EEGSGEGQNG KKVEKTVQKT
101: WEEMTLNEKA LELYVGEKGL LFWLNKLAYA SIYIVIGGWI LFRFVGPALN LYQLDTPPLD PKNILKG

Best Arabidopsis Sequence Match ( AT2G17972.1 )
(BLAST)

001: MKSLHFLAPN STIINLKQQS YTKTKFQLHR SNRRTLSINC VNSGGDEEKI TQPLDGVEIR FKRGSRRKMR EEGSGEGGGQ SGKKKETVQK PWEEMTLNEK
101: ALELYVGEKG LLFWLNKLAY ASIYIVIGGW IFFRFVGPAF NLYQLDTPPL DPKNILKG

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q8S8K0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.