Factsheet for Zm00001d014781_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003334_P001
Zm00001d005997_P002
Zm00001d020879_P001
Zm00001d025667_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17972.1	Zm00001d003334_P001	AT4G26455.1	21798944
AT2G17972.1	Zm00001d005997_P002	AT4G26455.1	21798944
AT2G17972.1	Zm00001d020879_P001	AT4G26455.1	21798944
AT2G17972.1	Zm00001d025667_P001	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER88960	Sorghum	plastid	80.87	78.72
Os06t0715200-01	Rice	plastid	60.66	57.51
TraesCS7B01G288600.1	Wheat	mitochondrion, plasma membrane, plastid	58.47	55.73
TraesCS7A01G385700.1	Wheat	mitochondrion	57.38	54.69
TraesCS7D01G382300.1	Wheat	mitochondrion, plasma membrane, plastid	57.38	54.69
HORVU7Hr1G091580.1	Barley	cytosol, peroxisome, plastid	56.83	50.49
CDY56584	Canola	plastid	37.7	41.32
Bra039904.1-P	Field mustard	plastid	37.16	40.72
CDY38164	Canola	plastid	37.16	40.72
AT2G17972.1	Thale cress	plastid	33.88	39.24
Solyc02g083970.1.1	Tomato	plastid	33.88	38.51
PGSC0003DMT400009351	Potato	plastid	33.88	38.04
KRH08082	Soybean	plastid	37.16	37.99
KRH69789	Soybean	plastid	34.97	36.16
VIT_04s0023g03290.t01	Wine grape	plastid	34.97	35.96

Protein Annotations

MapMan:35.2	ProteinID:AQK67167.1	UniProt:B6TLH7	EMBL:BT064830	InterPro:DUF2839	EMBL:EU965842
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0009507	GO:GO:0009535
GO:GO:0009536	GO:GO:0009579	GO:GO:0016020	GO:GO:0016021	PFAM:PF10999	PANTHER:PTHR36347
TMHMM:TMhelix	UniParc:UPI000182D629	EnsemblPlantsGene:Zm00001d014781	EnsemblPlants:Zm00001d014781_P001	EnsemblPlants:Zm00001d014781_T001	SEG:seg

Description

No Description!

Coordinates

chr5:+:62906432..62906983

Molecular Weight (calculated)

19477.8 Da

IEP (calculated)

11.309

GRAVY (calculated)

-0.239

Length

183 amino acids

Sequence
(BLAST)

001: MKHLHLSSSL PLLLHRPSKP HLLHPSRRRA SIRNAASGGG SGEPTPAAET ASGTSPPAAA KPAGVKDRLK ARNQARRVRL DSPPPEVVVV PKKKPAPAAS
101: SSPVPKKKVG RKGWEEMSLG EKAVDLYVGE KGLLFWLNKF AYASIFIMVG AWVLFRFVGP SLGLYQLDAP PLPPTAVFSG GSP

Best Arabidopsis Sequence Match ( AT2G17972.1 )
(BLAST)

001: MKSLHFLAPN STIINLKQQS YTKTKFQLHR SNRRTLSINC VNSGGDEEKI TQPLDGVEIR FKRGSRRKMR EEGSGEGGGQ SGKKKETVQK PWEEMTLNEK
101: ALELYVGEKG LLFWLNKLAY ASIYIVIGGW IFFRFVGPAF NLYQLDTPPL DPKNILKG

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q8S8K0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.