Factsheet for PGSC0003DMT400078196

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, endoplasmic reticulum

Predictor Summary:

nucleus 1
plastid 2
endoplasmic reticulum 4
vacuole 3
extracellular 2
golgi 2
plasma membrane 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	endoplasmic reticulum, vacuole
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g076410.2.1	Tomato	endoplasmic reticulum, plasma membrane	99.26	99.26
CDY09918	Canola	cytosol, plasma membrane	84.39	86.97
AT1G07420.1	Thale cress	endoplasmic reticulum, golgi	84.39	85.34
CDY68059	Canola	cytosol, plasma membrane	84.39	85.34
KRH74668	Soybean	extracellular, plasma membrane	84.76	84.13
KRH69485	Soybean	mitochondrion	84.39	83.76
CDY06704	Canola	endoplasmic reticulum, plasma membrane	85.5	83.33
VIT_06s0004g05470.t01	Wine grape	extracellular, plasma membrane	83.27	82.66
PGSC0003DMT400005519	Potato	extracellular, plasma membrane	79.55	80.45
CDY51371	Canola	cytosol	77.7	80.38
AT2G29390.1	Thale cress	cytosol	81.04	80.15
GSMUA_Achr7P10640_001	Banana	extracellular, plasma membrane	76.58	77.74
GSMUA_Achr6P04970_001	Banana	extracellular, plasma membrane	74.35	75.76
GSMUA_Achr9P03480_001	Banana	endoplasmic reticulum, plasma membrane	74.35	74.91
TraesCS4A01G179800.1	Wheat	endoplasmic reticulum	73.61	74.44
TraesCS4B01G139900.1	Wheat	endoplasmic reticulum	73.23	74.06
TraesCS4D01G134600.1	Wheat	endoplasmic reticulum	72.86	73.68
Os07t0101500-01	Rice	cytosol, endoplasmic reticulum, plasma membrane	72.49	72.76
CDY06258	Canola	cytosol	5.95	72.73
Os11t0707600-02	Rice	cytosol, endoplasmic reticulum, plasma membrane	71.75	72.56
Zm00001d048585_P002	Maize	plasma membrane	72.12	72.39
EER92925	Sorghum	endoplasmic reticulum, plasma membrane	72.12	72.39
Zm00001d011765_P002	Maize	endoplasmic reticulum	71.0	72.08
GSMUA_Achr10P...	Banana	cytosol	75.84	66.89
CDY06257	Canola	cytosol, plastid	49.07	66.33
CDX97889	Canola	golgi, plasma membrane	77.7	66.14
Bra039978.1-P	Field mustard	endoplasmic reticulum, golgi	75.84	63.55
KRH74671	Soybean	endoplasmic reticulum, extracellular, plasma membrane	55.76	53.0
CDX86488	Canola	cytosol	82.9	44.96
Bra030681.1-P	Field mustard	cytosol	82.53	42.94
CDY10274	Canola	cytosol	83.27	40.8
PGSC0003DMT400010023	Potato	endoplasmic reticulum	31.97	40.38
PGSC0003DMT400033236	Potato	cytosol	37.17	33.33

Protein Annotations

EntrezGene:102602168	MapMan:5.5.2.1	InterPro:Fatty_acid_hydroxylase	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005506	GO:GO:0005575	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0008610
GO:GO:0009058	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0055114	UniProt:M1CZL1
PFAM:PF04116	EnsemblPlantsGene:PGSC0003DMG400030422	PGSC:PGSC0003DMG400030422	EnsemblPlants:PGSC0003DMT400078196	PANTHER:PTHR11863	PANTHER:PTHR11863:SF96
TMHMM:TMhelix	UniParc:UPI000295C0B3	RefSeq:XP_006350790.1	:	:	:

Description

C-4 methyl sterol oxidase [Source:PGSC_GENE;Acc:PGSC0003DMG400030422]

Coordinates

chr6:-:56817964..56824008

Molecular Weight (calculated)

31347.2 Da

IEP (calculated)

7.977

GRAVY (calculated)

0.183

Length

269 amino acids

Sequence
(BLAST)

001: MASVIESAWT YLITNFNDFQ LACLGSFFLH ESVFFLSGLP FILLERAGWL SKYKIQTKNN TPAAQEKCIT RLLLYHFCVN LPLMMASYPV FKLMGMRNTL
101: PLPSWKVIST QVLFYFILED FVFYWGHRIL HTKWLYKHVH SVHHEYATPF GLTSEYAHPA EILFLGFATI VGPIITGPHL ITLWLWMILR VLETVEAHCG
201: YHFPWSLSNF LPLYGGADFH DYHHRLLYTK SGNYSSTFVY MDWLFGTDKG YRRLKVLKSD ACEAEGKEM

Best Arabidopsis Sequence Match ( AT1G07420.1 )
(BLAST)

001: MASFVESGWQ YLVTHFSDFQ LACIGSFLLH ESVFFLSGLP FIFLERQGFL SKYKIQTKNN TPAAQGKCIT RLLLYHFSVN LPLMLASYPV FRAMGMRSSF
101: PLPSWKEVSA QILFYFIIED FVFYWGHRIL HSKWLYKNVH SVHHEYATPF GLTSEYAHPA EILFLGFATI VGPALTGPHL ITLWLWMVLR VLETVEAHCG
201: YHFPWSLSNF LPLYGGADFH DYHHRLLYTK SGNYSSTFVY MDWIFGTDKG YRRLKTLKEN GDMKQT

Arabidopsis Description

SMO2-2Methylsterol monooxygenase 2-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8VWZ8]
SUBAcon: [golgi,endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.