CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
peroxisome 1
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, peroxisome, plastid, secretory
BaCelLo:	plastid
EpiLoc:	peroxisome
iPSORT:	plastid
MultiLoc:	extracellular
Plant-mPloc:	endoplasmic reticulum, vacuole
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH74668	Soybean	extracellular, plasma membrane	98.16	98.16
CDY09918	Canola	cytosol, plasma membrane	82.66	85.82
VIT_06s0004g05470.t01	Wine grape	extracellular, plasma membrane	85.61	85.61
AT1G07420.1	Thale cress	endoplasmic reticulum, golgi	83.76	85.34
CDY68059	Canola	cytosol, plasma membrane	83.76	85.34
PGSC0003DMT400078196	Potato	endoplasmic reticulum, plasma membrane	83.76	84.39
Solyc06g076410.2.1	Tomato	endoplasmic reticulum, plasma membrane	83.39	84.01
CDY06704	Canola	endoplasmic reticulum, plasma membrane	84.13	82.61
CDY51371	Canola	cytosol	77.49	80.77
AT2G29390.1	Thale cress	cytosol	80.44	80.15
GSMUA_Achr7P10640_001	Banana	extracellular, plasma membrane	77.12	78.87
GSMUA_Achr9P03480_001	Banana	endoplasmic reticulum, plasma membrane	76.38	77.53
PGSC0003DMT400005519	Potato	extracellular, plasma membrane	74.54	75.94
Solyc06g005750.2.1	Tomato	extracellular, plasma membrane	74.17	75.85
GSMUA_Achr6P04970_001	Banana	extracellular, plasma membrane	72.69	74.62
TraesCS4B01G139900.1	Wheat	endoplasmic reticulum	70.85	72.18
EER92925	Sorghum	endoplasmic reticulum, plasma membrane	71.22	72.01
TraesCS4A01G179800.1	Wheat	endoplasmic reticulum	70.48	71.8
TraesCS4D01G134600.1	Wheat	endoplasmic reticulum	70.48	71.8
Os07t0101500-01	Rice	cytosol, endoplasmic reticulum, plasma membrane	70.85	71.64
Zm00001d011765_P002	Maize	endoplasmic reticulum	69.74	71.32
Zm00001d048585_P002	Maize	plasma membrane	70.48	71.27
Os11t0707600-02	Rice	cytosol, endoplasmic reticulum, plasma membrane	69.37	70.68
CDY06257	Canola	cytosol, plastid	51.29	69.85
GSMUA_Achr10P...	Banana	cytosol	75.65	67.21
CDX97889	Canola	golgi, plasma membrane	77.12	66.14
CDY06258	Canola	cytosol	5.17	63.64
Bra039978.1-P	Field mustard	endoplasmic reticulum, golgi	74.54	62.93
KRH74671	Soybean	endoplasmic reticulum, extracellular, plasma membrane	56.46	54.06
CDX86488	Canola	cytosol	80.44	43.95
Bra030681.1-P	Field mustard	cytosol	80.81	42.36
CDY10274	Canola	cytosol	81.55	40.26
KRH04041	Soybean	endoplasmic reticulum	29.52	36.7
KRH57309	Soybean	endoplasmic reticulum	38.01	34.68
KRH40602	Soybean	cytosol, endoplasmic reticulum, plasma membrane	35.06	32.42
KRH57571	Soybean	plastid	9.96	24.11

Protein Annotations

EntrezGene:100790183	MapMan:5.5.2.1	EMBL:ACUP02000717	EMBL:BT098796	UniProt:C6TM45	InterPro:Fatty_acid_hydroxylase
EnsemblPlantsGene:GLYMA_02G030900	GO:GO:0000254	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005506
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789
GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0008610	GO:GO:0009058	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016126	GO:GO:0016491	GO:GO:0055114	GO:GO:0080065
EnsemblPlants:KRH69485	ProteinID:KRH69485	ProteinID:KRH69485.1	PFAM:PF04116	PANTHER:PTHR11863	PANTHER:PTHR11863:SF96
TMHMM:TMhelix	UniParc:UPI0001B171A6	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:2850927..2853813

Molecular Weight (calculated)

31691.5 Da

IEP (calculated)

8.688

GRAVY (calculated)

0.144

Length

271 amino acids

Sequence
(BLAST)

001: MASLIESGWQ YLITHFSDFQ LACLGSFFLH EGVFFLSGLP FIWLERAGWM SKYKIQAKNN TPAAQEKCIV RLLLYHFGVN LPVMVFSYPV FRYMGMRSSF
101: PLPSWKVVLI QIIFYFILED FIFYWGHRIL HTKWLYKHVH SVHHEYATPF GLTSEYAHPA EILFLGFATI FGPAITGPHL ITLWLWMVLR VLETVEAHCG
201: YHFPWSLSNF LPLYGGADFH DYHHRLLYTK SGNYSSTFTY MDRIFGTDIG YRKLKALKSI GVEDNSEQKK Q

Best Arabidopsis Sequence Match ( AT1G07420.1 )
(BLAST)

001: MASFVESGWQ YLVTHFSDFQ LACIGSFLLH ESVFFLSGLP FIFLERQGFL SKYKIQTKNN TPAAQGKCIT RLLLYHFSVN LPLMLASYPV FRAMGMRSSF
101: PLPSWKEVSA QILFYFIIED FVFYWGHRIL HSKWLYKNVH SVHHEYATPF GLTSEYAHPA EILFLGFATI VGPALTGPHL ITLWLWMVLR VLETVEAHCG
201: YHFPWSLSNF LPLYGGADFH DYHHRLLYTK SGNYSSTFVY MDWIFGTDKG YRRLKTLKEN GDMKQT

Arabidopsis Description

SMO2-2Methylsterol monooxygenase 2-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8VWZ8]
SUBAcon: [endoplasmic reticulum,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.