Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- cytosol 1
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 3
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY51371 | Canola | cytosol | 81.01 | 98.46 |
| AT2G29390.1 | Thale cress | cytosol | 75.63 | 87.87 |
| CDY09918 | Canola | cytosol, plasma membrane | 70.25 | 85.06 |
| CDY68059 | Canola | cytosol, plasma membrane | 70.25 | 83.46 |
| CDY06704 | Canola | endoplasmic reticulum, plasma membrane | 69.62 | 79.71 |
| PGSC0003DMT400078196 | Potato | endoplasmic reticulum, plasma membrane | 66.14 | 77.7 |
| Solyc06g076410.2.1 | Tomato | endoplasmic reticulum, plasma membrane | 65.82 | 77.32 |
| CDY06258 | Canola | cytosol | 5.38 | 77.27 |
| KRH69485 | Soybean | mitochondrion | 66.14 | 77.12 |
| Bra039978.1-P | Field mustard | endoplasmic reticulum, golgi | 78.16 | 76.95 |
| KRH74668 | Soybean | extracellular, plasma membrane | 65.82 | 76.75 |
| PGSC0003DMT400005519 | Potato | extracellular, plasma membrane | 63.61 | 75.56 |
| Solyc06g005750.2.1 | Tomato | extracellular, plasma membrane | 63.29 | 75.47 |
| VIT_06s0004g05470.t01 | Wine grape | extracellular, plasma membrane | 64.24 | 74.91 |
| GSMUA_Achr7P10640_001 | Banana | extracellular, plasma membrane | 62.03 | 73.96 |
| GSMUA_Achr9P03480_001 | Banana | endoplasmic reticulum, plasma membrane | 62.34 | 73.78 |
| GSMUA_Achr6P04970_001 | Banana | extracellular, plasma membrane | 60.44 | 72.35 |
| Os07t0101500-01 | Rice | cytosol, endoplasmic reticulum, plasma membrane | 60.44 | 71.27 |
| TraesCS4A01G179800.1 | Wheat | endoplasmic reticulum | 58.86 | 69.92 |
| TraesCS4B01G139900.1 | Wheat | endoplasmic reticulum | 58.86 | 69.92 |
| TraesCS4D01G134600.1 | Wheat | endoplasmic reticulum | 58.86 | 69.92 |
| Zm00001d048585_P002 | Maize | plasma membrane | 59.18 | 69.78 |
| EER92925 | Sorghum | endoplasmic reticulum, plasma membrane | 59.18 | 69.78 |
| Os11t0707600-02 | Rice | cytosol, endoplasmic reticulum, plasma membrane | 58.23 | 69.17 |
| Zm00001d011765_P002 | Maize | endoplasmic reticulum | 57.91 | 69.06 |
| CDY06257 | Canola | cytosol, plastid | 43.04 | 68.34 |
| GSMUA_Achr10P... | Banana | cytosol | 61.71 | 63.93 |
| KRH74671 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 41.77 | 46.64 |
| CDX86488 | Canola | cytosol | 68.35 | 43.55 |
| CDY71421 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 24.68 | 42.86 |
| CDY10274 | Canola | cytosol | 67.41 | 38.8 |
| CDX97357 | Canola | cytosol | 32.28 | 36.43 |
| CDY41295 | Canola | cytosol | 27.85 | 34.11 |
| CDY41294 | Canola | cytosol | 31.96 | 33.89 |
| CDY04397 | Canola | cytosol, plasma membrane, plastid | 31.96 | 33.89 |
| CDX82968 | Canola | plasma membrane | 31.96 | 26.86 |
| CDX94121 | Canola | cytosol | 18.35 | 23.48 |
Protein Annotations
| EnsemblPlants:CDX97889 | EnsemblPlantsGene:GSBRNA2T00105227001 | GO:A0A078EAT3 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0005506 | GO:GO:0006629 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008610 | GO:GO:0009058 |
| GO:GO:0016491 | GO:GO:0055114 | InterPro:Fatty_acid_hydroxylase | PANTHER:PTHR11863 | PANTHER:PTHR11863:SF96 | PFAM:PF04116 |
| ProteinID:CDX97889 | ProteinID:CDX97889.1 | TMHMM:TMhelix | UniParc:UPI0004EE92AB | MapMan:5.5.2.1 | : |
Description
BnaC04g40500D
Coordinates
chrLK031901:+:1222778..1224522
Molecular Weight (calculated)
36507.6 Da
IEP (calculated)
8.527
GRAVY (calculated)
0.338
Length
316 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSLVESGWQ VYTMLSKCAY ACIYLVRLIL VCGVVHRIGL LRPLRACGFR SGSISNIITA LESLLFYLVS NFSDFQLACI GSFIVHETVF FLSGLPYILL
101: ERTGLLSNYK IQTKHNTPEA QGKCIAWLLF YHSCVNFPLM MFSYRVFKFM GMQSSFPLPS WKVVSAQILF FFIIEDFVFY WGHRILHTKW LYKNVHSVHH
201: EYATPFGLTS EYAHPAEILF LGFATFIGPA LTGPHLITLW LWLVLRVIET VEAHCGYHFP WSPSNFLPLY GGADFHDYHH RLLYTKSGNY SSTFVYMDWI
301: FGTDKGYRKL KALKET
101: ERTGLLSNYK IQTKHNTPEA QGKCIAWLLF YHSCVNFPLM MFSYRVFKFM GMQSSFPLPS WKVVSAQILF FFIIEDFVFY WGHRILHTKW LYKNVHSVHH
201: EYATPFGLTS EYAHPAEILF LGFATFIGPA LTGPHLITLW LWLVLRVIET VEAHCGYHFP WSPSNFLPLY GGADFHDYHH RLLYTKSGNY SSTFVYMDWI
301: FGTDKGYRKL KALKET
001: MMQYLVTHFS DFQLACIGSF ILHESVFFLS GLPYIFLERT GFLSNYKIQT KSNTPEAQGK CIARLLLYHC CVNLPLMMAS YPVFRFMGME SSFPLPSWKV
101: VSAQILFYFI IEDFVFYWGH RILHTKWLYK NVHSVHHEYA TPFGLTSEYA HPAEILFLGF ATIVGPALTG PHLITLWLWM MLRVIETVEA HCGYHFPWSP
201: SNFLPLYGGA DFHDYHHRLL YTKSGNYSST FVYMDWIFGT DKGYRKLKAL KET
101: VSAQILFYFI IEDFVFYWGH RILHTKWLYK NVHSVHHEYA TPFGLTSEYA HPAEILFLGF ATIVGPALTG PHLITLWLWM MLRVIETVEA HCGYHFPWSP
201: SNFLPLYGGA DFHDYHHRLL YTKSGNYSST FVYMDWIFGT DKGYRKLKAL KET
Arabidopsis Description
SMO2-1Methylsterol monooxygenase 2-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZW22]
SUBAcon: [endoplasmic reticulum,plasma membrane]
SUBAcon: [endoplasmic reticulum,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.