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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 2
  • golgi 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus, plasma membrane, plastid
BaCelLo:nucleus
MultiLoc:cytosol
Predotar:plastid
PProwler:secretory
WoLF PSORT:cytosol
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY71421 Canola endoplasmic reticulum, extracellular, plasma membrane 53.88 76.37
AT4G22755.1 Thale cress cytosol, endoplasmic reticulum, plasma membrane 85.66 75.94
CDY04397 Canola cytosol, plasma membrane, plastid 75.97 65.77
CDX97357 Canola cytosol 70.16 64.64
CDY41294 Canola cytosol 74.03 64.09
Solyc08g079570.2.1 Tomato cytosol 66.28 57.77
PGSC0003DMT400010023 Potato endoplasmic reticulum 46.9 56.81
KRH40602 Soybean cytosol, endoplasmic reticulum, plasma membrane 59.69 52.56
Os10t0545200-01 Rice cytosol, plasma membrane, plastid 61.24 52.49
GSMUA_Achr11P... Banana plasma membrane 61.63 52.48
GSMUA_Achr8P19400_001 Banana plastid 48.06 51.88
HORVU1Hr1G052890.1 Barley plasma membrane 60.47 51.83
GSMUA_Achr5P19760_001 Banana plasma membrane 60.85 51.82
EER94557 Sorghum cytosol 59.69 51.16
TraesCS1B01G219200.2 Wheat plasma membrane 59.3 51.0
TraesCS1A01G205700.1 Wheat plasma membrane 59.3 50.83
TraesCS1D01G208900.1 Wheat plasma membrane 59.3 50.83
CDX82968 Canola plasma membrane 74.03 50.8
GSMUA_Achr5P18800_001 Banana cytosol, peroxisome, plasma membrane 58.14 50.0
Zm00001d040979_P001 Maize cytosol, plasma membrane, plastid 41.09 48.62
GSMUA_Achr11P... Banana cytosol, peroxisome, plasma membrane 55.81 47.21
HORVU4Hr1G018180.1 Barley cytosol, golgi, plastid 31.78 46.59
HORVU4Hr1G080880.2 Barley plasma membrane 51.94 45.89
TraesCS4B01G332500.1 Wheat plasma membrane 51.55 45.86
HORVU1Hr1G001170.1 Barley cytosol 49.22 44.88
TraesCS4D01G329200.1 Wheat plasma membrane 50.0 44.48
TraesCS1D01G007100.1 Wheat cytosol, plasma membrane, plastid 51.16 44.44
HORVU7Hr1G000980.3 Barley plasma membrane 49.22 44.25
OQU77931 Sorghum cytosol, endoplasmic reticulum, plasma membrane 38.76 43.86
Os03t0108500-01 Rice cytosol 50.39 43.33
TraesCS5A01G503600.2 Wheat cytosol, endoplasmic reticulum, plasma membrane 50.0 43.14
TraesCSU01G085800.1 Wheat cytosol, plasma membrane, plastid 49.61 42.81
TraesCS1D01G008900.1 Wheat plasma membrane 49.61 42.81
TraesCS5A01G414500.1 Wheat plasma membrane 46.9 41.72
OQU86919 Sorghum golgi, peroxisome, plasma membrane 47.67 41.69
TraesCS5D01G422900.1 Wheat plasma membrane 46.51 41.38
TraesCS4B01G097200.1 Wheat cytosol, golgi, plasma membrane 47.67 40.86
HORVU4Hr1G018150.1 Barley cytosol, golgi, plasma membrane 47.29 40.53
TraesCS4D01G093600.1 Wheat cytosol, endoplasmic reticulum, plasma membrane 47.29 40.53
TraesCS4A01G218400.1 Wheat cytosol, golgi, plasma membrane 47.29 40.53
OQU79557 Sorghum golgi, peroxisome, plasma membrane 46.9 40.2
Zm00001d041458_P001 Maize plasma membrane 44.96 39.59
OQU80062 Sorghum plasma membrane 45.74 39.07
TraesCS7A01G013400.1 Wheat plasma membrane 45.35 39.0
Zm00001d029810_P001 Maize mitochondrion 58.91 37.07
OQU79560 Sorghum endoplasmic reticulum, plasma membrane, plastid 41.86 36.99
CDY06257 Canola cytosol, plastid 28.29 36.68
CDY09918 Canola cytosol, plasma membrane 36.05 35.63
CDY68059 Canola cytosol, plasma membrane 36.05 34.96
HORVU4Hr1G090810.1 Barley cytosol 51.55 34.91
CDY51371 Canola cytosol 34.88 34.62
CDY06704 Canola endoplasmic reticulum, plasma membrane 36.43 34.06
CDX97889 Canola golgi, plasma membrane 34.11 27.85
CDX94121 Canola cytosol 22.09 23.08
CDX86488 Canola cytosol 36.82 19.15
CDY10274 Canola cytosol 36.82 17.3
CDY06258 Canola cytosol 0.0 0.0
Protein Annotations
MapMan:5.5.2.1GO:A0A078HRQ5UniProt:A0A078HRQ5EnsemblPlants:CDY41295ProteinID:CDY41295ProteinID:CDY41295.1
InterPro:Fatty_acid_hydroxylaseGO:GO:0003674GO:GO:0003824GO:GO:0005488GO:GO:0005506GO:GO:0005575
GO:GO:0006629GO:GO:0008150GO:GO:0008152GO:GO:0008610GO:GO:0009058GO:GO:0016020
GO:GO:0016021GO:GO:0016491GO:GO:0055114EnsemblPlantsGene:GSBRNA2T00072724001PFAM:PF04116PANTHER:PTHR11863
PANTHER:PTHR11863:SF67TMHMM:TMhelixUniParc:UPI0004EEFA42SEG:seg::
Description
BnaA01g12440DBnaA01g12440D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HRQ5]
Coordinates
chrLK032494:+:287444..288602
Molecular Weight (calculated)
30098.8 Da
IEP (calculated)
7.417
GRAVY (calculated)
0.288
Length
258 amino acids
Sequence
(BLAST)
001: MIPYPTVQDA SVALGRNLTW FETVWFDYSA TKSDFHVYCH TILVLFLVFS LAPLPFVFVE LTGWFERFKI QPKVKYSLSD MFLCYKEVMK LFLRVVGTLQ
101: FVTYPSIQMA GIRSGLPLPS LMEIVAQLVV YFLIEDYTNY WIHRWLHCKW GYEKIHRVHH EYTSPIGYAS PYAHWAEVLL LGIPTFLGPA IAPGHIMTFW
201: LWISLRQMEA IETHSGYDLP WTLTKLVPFY GGAGYHDYHH YVGGKRTVLT YLSVCIEF
Best Arabidopsis Sequence Match ( AT4G22755.1 )
(BLAST)
001: MIPYPTVEDA SVALGRNLTW FETVWFDYSA TKSNFHVYCH TILVLFLVFS LAPFPLVIVE WTGWFDQFKI QKKVKYSLSD MFQCYKEVMK LFLLVVGTLQ
101: IVSYPSIQMV GIRSGLPLPS LMEIVAQLVV YFLIEDYTNY WIHRWMHCKW GYEKIHRIHH EYTSPIGYAS PYAHWAEILI LGIPTFLGPA IAPGHIMTFW
201: LWISLRQFEA IETHSGYDFP WSVTKLIPFY GGPEYHDYHH YVGGQSQSNF ASVFTYCDYI YGTDKGYRIH KKLLHHQIKE EAEEKRVRKH D
Arabidopsis Description
SMO1-3SMO1-3 [Source:UniProtKB/TrEMBL;Acc:A0A178V2R2]
SUBAcon: [endoplasmic reticulum,cytosol,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.