Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G218400.1 | Wheat | cytosol, golgi, plasma membrane | 99.34 | 99.34 |
| TraesCS4D01G093600.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 98.67 | 98.67 |
| HORVU4Hr1G018150.1 | Barley | cytosol, golgi, plasma membrane | 97.01 | 97.01 |
| HORVU4Hr1G018180.1 | Barley | cytosol, golgi, plastid | 55.48 | 94.89 |
| TraesCS4B01G332500.1 | Wheat | plasma membrane | 62.13 | 64.48 |
| TraesCS1B01G219200.2 | Wheat | plasma membrane | 63.79 | 64.0 |
| GSMUA_Achr5P19760_001 | Banana | plasma membrane | 63.12 | 62.71 |
| GSMUA_Achr11P... | Banana | plasma membrane | 61.46 | 61.06 |
| CDY71421 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 36.21 | 59.89 |
| Zm00001d040979_P001 | Maize | cytosol, plasma membrane, plastid | 42.86 | 59.17 |
| OQU86919 | Sorghum | golgi, peroxisome, plasma membrane | 57.14 | 58.31 |
| PGSC0003DMT400010023 | Potato | endoplasmic reticulum | 41.2 | 58.22 |
| OQU80062 | Sorghum | plasma membrane | 56.48 | 56.29 |
| KRH57309 | Soybean | endoplasmic reticulum | 55.48 | 56.23 |
| CDY41294 | Canola | cytosol | 54.82 | 55.37 |
| OQU79557 | Sorghum | golgi, peroxisome, plasma membrane | 55.15 | 55.15 |
| AT4G22756.1 | Thale cress | plasma membrane | 53.49 | 53.85 |
| Bra033117.1-P | Field mustard | cytosol | 53.16 | 53.69 |
| KRH04041 | Soybean | endoplasmic reticulum | 38.87 | 53.67 |
| Solyc08g079570.2.1 | Tomato | cytosol | 52.49 | 53.38 |
| AT4G12110.1 | Thale cress | cytosol, endoplasmic reticulum, plasma membrane | 52.49 | 53.02 |
| CDX97357 | Canola | cytosol | 48.84 | 52.5 |
| CDY04397 | Canola | cytosol, plasma membrane, plastid | 51.83 | 52.35 |
| Zm00001d041458_P001 | Maize | plasma membrane | 50.5 | 51.88 |
| VIT_00s2125g00010.t01 | Wine grape | cytosol | 37.54 | 51.13 |
| AT4G22755.1 | Thale cress | cytosol, endoplasmic reticulum, plasma membrane | 48.84 | 50.52 |
| OQU79560 | Sorghum | endoplasmic reticulum, plasma membrane, plastid | 48.84 | 50.34 |
| KRH40602 | Soybean | cytosol, endoplasmic reticulum, plasma membrane | 47.84 | 49.15 |
| Solyc01g091320.2.1 | Tomato | cytosol | 48.51 | 48.67 |
| CDY41295 | Canola | cytosol | 40.86 | 47.67 |
| PGSC0003DMT400033236 | Potato | cytosol | 47.51 | 47.67 |
| CDX82968 | Canola | plasma membrane | 53.82 | 43.09 |
| KRH57571 | Soybean | plastid | 15.61 | 41.96 |
| Bra013643.1-P | Field mustard | cytosol | 54.15 | 36.71 |
| TraesCS4B01G139900.1 | Wheat | endoplasmic reticulum | 30.56 | 34.59 |
| CDX94121 | Canola | cytosol | 24.92 | 30.36 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G097200.1 | EnsemblPlantsGene:TraesCS4B01G097200 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005506 |
| GO:GO:0006629 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008610 | GO:GO:0009058 | GO:GO:0016491 |
| GO:GO:0055114 | InterPro:Fatty_acid_hydroxylase | PANTHER:PTHR11863 | PANTHER:PTHR11863:SF51 | PFAM:PF04116 | SEG:seg |
| MapMan:5.5.2.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr4B:+:101774767..101778506
Molecular Weight (calculated)
33831.8 Da
IEP (calculated)
7.801
GRAVY (calculated)
0.045
Length
301 amino acids
Sequence
(BLAST)
(BLAST)
001: MLPYATAGEA EAALGRALTW AEAAWLRYSA SVPDRYLHWP NIAITLVVYT LAPLPLALFD LAAPAAAAPY KLQPKVQHPP STFFRCYMDA VRVSLLIIGP
101: YQLISYPAAK IMDIRTGLPL PSMGEIAAQL TVYFLVEDYL NYWLHRLLHT KWGYEKIHHV HHEFTAPMAY AAWYGHWAEM LILAVPSLAG PALVPCHVTT
201: LWIWFAARLV ESLNIHSGFK LPFNAEKYIP FYGGAEHHDY HHYIGGQSKS NFAPVFTYCD YIYGTDKGYR YHKATLAKLK ELAGSDVQKG VDNGFNGGKQ
301: D
101: YQLISYPAAK IMDIRTGLPL PSMGEIAAQL TVYFLVEDYL NYWLHRLLHT KWGYEKIHHV HHEFTAPMAY AAWYGHWAEM LILAVPSLAG PALVPCHVTT
201: LWIWFAARLV ESLNIHSGFK LPFNAEKYIP FYGGAEHHDY HHYIGGQSKS NFAPVFTYCD YIYGTDKGYR YHKATLAKLK ELAGSDVQKG VDNGFNGGKQ
301: D
001: MIPYATIEEA SIALSRNLTW LETLWFDYSA TKSDYYLYCH NILFLFLIFS LVPLPLVFIE SSQSTSDLFN RYKIQPKVKN SFSSMFKCYK DVMKMFILVV
101: GPLQLVSYPS IQMIEIRSGL PLPSCMEIVA QLVVYFLVED YTNYWVHRFF HCKWGYEKFH HIHHEYTAPI GYAAPYAHWA EVLLLGIPTF LGPAIAPGHM
201: ITFWLWIALR QIEAIETHSG YDFPWSLTKY IPFYGGAEYH DYHHYVGGQS QSNFASVFTY CDYIYGTDKG YRFQKKLLQQ MKEKSKKSNK LVNGGEKFD
101: GPLQLVSYPS IQMIEIRSGL PLPSCMEIVA QLVVYFLVED YTNYWVHRFF HCKWGYEKFH HIHHEYTAPI GYAAPYAHWA EVLLLGIPTF LGPAIAPGHM
201: ITFWLWIALR QIEAIETHSG YDFPWSLTKY IPFYGGAEYH DYHHYVGGQS QSNFASVFTY CDYIYGTDKG YRFQKKLLQQ MKEKSKKSNK LVNGGEKFD
Arabidopsis Description
SMO1-2Methylsterol monooxygenase 1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q1EC69]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.