Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- endoplasmic reticulum 3
- vacuole 2
- extracellular 1
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY71421 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 54.64 | 87.36 |
| CDY41295 | Canola | cytosol | 75.94 | 85.66 |
| AT4G22756.1 | Thale cress | plasma membrane | 75.6 | 73.58 |
| AT4G12110.1 | Thale cress | cytosol, endoplasmic reticulum, plasma membrane | 75.26 | 73.49 |
| PGSC0003DMT400010023 | Potato | endoplasmic reticulum | 50.52 | 69.01 |
| Solyc08g079570.2.1 | Tomato | cytosol | 65.98 | 64.86 |
| GSMUA_Achr8P19400_001 | Banana | plastid | 51.2 | 62.34 |
| GSMUA_Achr11P... | Banana | plasma membrane | 64.26 | 61.72 |
| HORVU1Hr1G052890.1 | Barley | plasma membrane | 63.23 | 61.13 |
| GSMUA_Achr5P19760_001 | Banana | plasma membrane | 63.23 | 60.73 |
| Os10t0545200-01 | Rice | cytosol, plasma membrane, plastid | 62.54 | 60.47 |
| TraesCS1A01G205700.1 | Wheat | plasma membrane | 62.54 | 60.47 |
| TraesCS1D01G208900.1 | Wheat | plasma membrane | 62.54 | 60.47 |
| KRH40602 | Soybean | cytosol, endoplasmic reticulum, plasma membrane | 60.48 | 60.07 |
| TraesCS1B01G219200.2 | Wheat | plasma membrane | 61.86 | 60.0 |
| EER94557 | Sorghum | cytosol | 61.17 | 59.14 |
| HORVU4Hr1G018180.1 | Barley | cytosol, golgi, plastid | 35.74 | 59.09 |
| GSMUA_Achr5P18800_001 | Banana | cytosol, peroxisome, plasma membrane | 58.76 | 57.0 |
| GSMUA_Achr11P... | Banana | cytosol, peroxisome, plasma membrane | 56.7 | 54.1 |
| TraesCS4B01G332500.1 | Wheat | plasma membrane | 53.26 | 53.45 |
| HORVU4Hr1G080880.2 | Barley | plasma membrane | 53.61 | 53.42 |
| TraesCS4D01G329200.1 | Wheat | plasma membrane | 51.89 | 52.07 |
| Os03t0108500-01 | Rice | cytosol | 53.61 | 52.0 |
| HORVU7Hr1G000980.3 | Barley | plasma membrane | 50.52 | 51.22 |
| TraesCS5A01G503600.2 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 52.23 | 50.84 |
| HORVU1Hr1G001170.1 | Barley | cytosol | 48.8 | 50.18 |
| TraesCS1D01G007100.1 | Wheat | cytosol, plasma membrane, plastid | 50.86 | 49.83 |
| TraesCS4B01G097200.1 | Wheat | cytosol, golgi, plasma membrane | 50.52 | 48.84 |
| TraesCS4A01G218400.1 | Wheat | cytosol, golgi, plasma membrane | 50.17 | 48.51 |
| TraesCS4D01G093600.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 49.83 | 48.17 |
| HORVU4Hr1G018150.1 | Barley | cytosol, golgi, plasma membrane | 49.83 | 48.17 |
| TraesCSU01G085800.1 | Wheat | cytosol, plasma membrane, plastid | 49.48 | 48.16 |
| TraesCS1D01G008900.1 | Wheat | plasma membrane | 49.48 | 48.16 |
| OQU86919 | Sorghum | golgi, peroxisome, plasma membrane | 48.45 | 47.8 |
| TraesCS5D01G422900.1 | Wheat | plasma membrane | 46.74 | 46.9 |
| TraesCS5A01G414500.1 | Wheat | plasma membrane | 46.74 | 46.9 |
| Zm00001d040979_P001 | Maize | cytosol, plasma membrane, plastid | 35.05 | 46.79 |
| TraesCS7A01G013400.1 | Wheat | plasma membrane | 48.11 | 46.67 |
| OQU80062 | Sorghum | plasma membrane | 47.77 | 46.03 |
| Zm00001d041458_P001 | Maize | plasma membrane | 45.02 | 44.71 |
| OQU79557 | Sorghum | golgi, peroxisome, plasma membrane | 46.05 | 44.52 |
| Zm00001d029810_P001 | Maize | mitochondrion | 60.82 | 43.17 |
| OQU77931 | Sorghum | cytosol, endoplasmic reticulum, plasma membrane | 33.68 | 42.98 |
| OQU79560 | Sorghum | endoplasmic reticulum, plasma membrane, plastid | 41.58 | 41.44 |
| HORVU4Hr1G090810.1 | Barley | cytosol | 52.92 | 40.42 |
| AT1G07420.1 | Thale cress | endoplasmic reticulum, golgi | 35.4 | 38.72 |
| AT2G29390.1 | Thale cress | cytosol | 34.71 | 37.13 |
Protein Annotations
| EntrezGene:28720173 | MapMan:5.5.2.1 | UniProt:A0A178V2R2 | EMBL:AL021635 | ProteinID:ANM66182.1 | ArrayExpress:AT4G22755 |
| EnsemblPlantsGene:AT4G22755 | EnsemblPlants:AT4G22755.1 | EMBL:AY323213 | UniProt:F4JLZ6 | InterPro:Fatty_acid_hydroxylase | GO:GO:0000254 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004497 | GO:GO:0005488 | GO:GO:0005506 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0006629 |
| GO:GO:0006694 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008202 | GO:GO:0008610 | GO:GO:0009058 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016126 | GO:GO:0016491 | GO:GO:0055114 | RefSeq:NP_567669.1 |
| ProteinID:OAP00617.1 | PFAM:PF04116 | PANTHER:PTHR11863 | PANTHER:PTHR11863:SF67 | TMHMM:TMhelix | UniParc:UPI0000162AFE |
Description
SMO1-3SMO1-3 [Source:UniProtKB/TrEMBL;Acc:A0A178V2R2]
Coordinates
chr4:-:11951830..11953731
Molecular Weight (calculated)
34285.5 Da
IEP (calculated)
7.303
GRAVY (calculated)
0.004
Length
291 amino acids
Sequence
(BLAST)
(BLAST)
001: MIPYPTVEDA SVALGRNLTW FETVWFDYSA TKSNFHVYCH TILVLFLVFS LAPFPLVIVE WTGWFDQFKI QKKVKYSLSD MFQCYKEVMK LFLLVVGTLQ
101: IVSYPSIQMV GIRSGLPLPS LMEIVAQLVV YFLIEDYTNY WIHRWMHCKW GYEKIHRIHH EYTSPIGYAS PYAHWAEILI LGIPTFLGPA IAPGHIMTFW
201: LWISLRQFEA IETHSGYDFP WSVTKLIPFY GGPEYHDYHH YVGGQSQSNF ASVFTYCDYI YGTDKGYRIH KKLLHHQIKE EAEEKRVRKH D
101: IVSYPSIQMV GIRSGLPLPS LMEIVAQLVV YFLIEDYTNY WIHRWMHCKW GYEKIHRIHH EYTSPIGYAS PYAHWAEILI LGIPTFLGPA IAPGHIMTFW
201: LWISLRQFEA IETHSGYDFP WSVTKLIPFY GGPEYHDYHH YVGGQSQSNF ASVFTYCDYI YGTDKGYRIH KKLLHHQIKE EAEEKRVRKH D
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.