Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 1
- endoplasmic reticulum 2
- vacuole 1
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G218400.1 | Wheat | cytosol, golgi, plasma membrane | 98.67 | 98.67 |
| TraesCS4B01G097200.1 | Wheat | cytosol, golgi, plasma membrane | 98.67 | 98.67 |
| HORVU4Hr1G018150.1 | Barley | cytosol, golgi, plasma membrane | 96.35 | 96.35 |
| HORVU4Hr1G018180.1 | Barley | cytosol, golgi, plastid | 54.82 | 93.75 |
| TraesCS4D01G329200.1 | Wheat | plasma membrane | 62.46 | 64.83 |
| TraesCS1D01G208900.1 | Wheat | plasma membrane | 63.12 | 63.12 |
| GSMUA_Achr5P19760_001 | Banana | plasma membrane | 62.79 | 62.38 |
| GSMUA_Achr11P... | Banana | plasma membrane | 60.8 | 60.4 |
| Zm00001d040979_P001 | Maize | cytosol, plasma membrane, plastid | 43.19 | 59.63 |
| CDY71421 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 35.88 | 59.34 |
| TraesCS1D01G008900.1 | Wheat | plasma membrane | 58.14 | 58.53 |
| OQU86919 | Sorghum | golgi, peroxisome, plasma membrane | 57.14 | 58.31 |
| PGSC0003DMT400010023 | Potato | endoplasmic reticulum | 40.86 | 57.75 |
| TraesCS1D01G007100.1 | Wheat | cytosol, plasma membrane, plastid | 56.81 | 57.58 |
| OQU80062 | Sorghum | plasma membrane | 56.81 | 56.62 |
| TraesCS5D01G422900.1 | Wheat | plasma membrane | 54.15 | 56.21 |
| KRH57309 | Soybean | endoplasmic reticulum | 55.15 | 55.89 |
| OQU79557 | Sorghum | golgi, peroxisome, plasma membrane | 55.15 | 55.15 |
| CDY41294 | Canola | cytosol | 53.82 | 54.36 |
| KRH04041 | Soybean | endoplasmic reticulum | 39.2 | 54.13 |
| AT4G22756.1 | Thale cress | plasma membrane | 52.82 | 53.18 |
| Bra033117.1-P | Field mustard | cytosol | 52.49 | 53.02 |
| Solyc08g079570.2.1 | Tomato | cytosol | 51.83 | 52.7 |
| AT4G12110.1 | Thale cress | cytosol, endoplasmic reticulum, plasma membrane | 51.83 | 52.35 |
| CDX97357 | Canola | cytosol | 48.17 | 51.79 |
| CDY04397 | Canola | cytosol, plasma membrane, plastid | 51.16 | 51.68 |
| VIT_00s2125g00010.t01 | Wine grape | cytosol | 37.87 | 51.58 |
| Zm00001d041458_P001 | Maize | plasma membrane | 50.17 | 51.54 |
| OQU79560 | Sorghum | endoplasmic reticulum, plasma membrane, plastid | 48.51 | 50.0 |
| AT4G22755.1 | Thale cress | cytosol, endoplasmic reticulum, plasma membrane | 48.17 | 49.83 |
| KRH40602 | Soybean | cytosol, endoplasmic reticulum, plasma membrane | 47.84 | 49.15 |
| Solyc01g091320.2.1 | Tomato | cytosol | 47.51 | 47.67 |
| CDY41295 | Canola | cytosol | 40.53 | 47.29 |
| PGSC0003DMT400033236 | Potato | cytosol | 46.51 | 46.67 |
| CDX82968 | Canola | plasma membrane | 52.82 | 42.29 |
| KRH57571 | Soybean | plastid | 15.61 | 41.96 |
| Bra013643.1-P | Field mustard | cytosol | 53.16 | 36.04 |
| TraesCS4D01G134600.1 | Wheat | endoplasmic reticulum | 30.23 | 34.21 |
| CDX94121 | Canola | cytosol | 24.58 | 29.96 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G093600.1 | EnsemblPlantsGene:TraesCS4D01G093600 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005506 |
| GO:GO:0006629 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008610 | GO:GO:0009058 | GO:GO:0016491 |
| GO:GO:0055114 | InterPro:Fatty_acid_hydroxylase | PANTHER:PTHR11863 | PANTHER:PTHR11863:SF51 | PFAM:PF04116 | SEG:seg |
| MapMan:5.5.2.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr4D:+:69127088..69129717
Molecular Weight (calculated)
33819.8 Da
IEP (calculated)
7.801
GRAVY (calculated)
0.048
Length
301 amino acids
Sequence
(BLAST)
(BLAST)
001: MLPYATAGEA EAALGRALTW AEAAWLRYSA SVPDRYLHWP NIAITLVVYT LAPLPLALFD LAAPAAAAPY KLQPKVQHPP ATFFRCYMDA VRVSLLIIGP
101: YQLISYPAAK IMDIRTGLPL PSMGEIMAQL TVYFLVEDYL NYWLHRLLHT KWGYEKIHHV HHEFTAPMAY AAWYGHWAEM LILAVPSLAG PALVPCHVTT
201: LWIWFAARLV ESLNIHSGFK LPFNAEKYIP FYGGAEHHDY HHYIGGQSKS NFAPVFTYCD YIYGTDKGYK YHKATLAKLK ELAGSDVQKG ADNGFNGGKQ
301: D
101: YQLISYPAAK IMDIRTGLPL PSMGEIMAQL TVYFLVEDYL NYWLHRLLHT KWGYEKIHHV HHEFTAPMAY AAWYGHWAEM LILAVPSLAG PALVPCHVTT
201: LWIWFAARLV ESLNIHSGFK LPFNAEKYIP FYGGAEHHDY HHYIGGQSKS NFAPVFTYCD YIYGTDKGYK YHKATLAKLK ELAGSDVQKG ADNGFNGGKQ
301: D
001: MASFVESGWQ YLVTHFSDFQ LACIGSFLLH ESVFFLSGLP FIFLERQGFL SKYKIQTKNN TPAAQGKCIT RLLLYHFSVN LPLMLASYPV FRAMGMRSSF
101: PLPSWKEVSA QILFYFIIED FVFYWGHRIL HSKWLYKNVH SVHHEYATPF GLTSEYAHPA EILFLGFATI VGPALTGPHL ITLWLWMVLR VLETVEAHCG
201: YHFPWSLSNF LPLYGGADFH DYHHRLLYTK SGNYSSTFVY MDWIFGTDKG YRRLKTLKEN GDMKQT
101: PLPSWKEVSA QILFYFIIED FVFYWGHRIL HSKWLYKNVH SVHHEYATPF GLTSEYAHPA EILFLGFATI VGPALTGPHL ITLWLWMVLR VLETVEAHCG
201: YHFPWSLSNF LPLYGGADFH DYHHRLLYTK SGNYSSTFVY MDWIFGTDKG YRRLKTLKEN GDMKQT
Arabidopsis Description
SMO2-2Methylsterol monooxygenase 2-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8VWZ8]
SUBAcon: [endoplasmic reticulum,golgi]
SUBAcon: [endoplasmic reticulum,golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.