Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 3
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G007100.1 | Wheat | cytosol, plasma membrane, plastid | 94.65 | 95.29 |
| TraesCSU01G085800.1 | Wheat | cytosol, plasma membrane, plastid | 94.65 | 94.65 |
| HORVU1Hr1G001170.1 | Barley | cytosol | 84.28 | 89.05 |
| TraesCS4D01G329200.1 | Wheat | plasma membrane | 65.55 | 67.59 |
| TraesCS5D01G422900.1 | Wheat | plasma membrane | 61.2 | 63.1 |
| TraesCS1D01G208900.1 | Wheat | plasma membrane | 61.87 | 61.46 |
| CDY71421 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 36.12 | 59.34 |
| OQU77931 | Sorghum | cytosol, endoplasmic reticulum, plasma membrane | 44.82 | 58.77 |
| TraesCS4D01G093600.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 58.53 | 58.14 |
| GSMUA_Achr11P... | Banana | plasma membrane | 58.19 | 57.43 |
| GSMUA_Achr5P19760_001 | Banana | plasma membrane | 57.86 | 57.1 |
| KRH04041 | Soybean | endoplasmic reticulum | 41.47 | 56.88 |
| PGSC0003DMT400010023 | Potato | endoplasmic reticulum | 39.8 | 55.87 |
| KRH57309 | Soybean | endoplasmic reticulum | 54.85 | 55.22 |
| VIT_00s2125g00010.t01 | Wine grape | cytosol | 40.8 | 55.2 |
| CDX97357 | Canola | cytosol | 49.16 | 52.5 |
| Solyc08g079570.2.1 | Tomato | cytosol | 51.84 | 52.36 |
| Bra033117.1-P | Field mustard | cytosol | 52.17 | 52.35 |
| CDY41294 | Canola | cytosol | 51.84 | 52.01 |
| AT4G12110.1 | Thale cress | cytosol, endoplasmic reticulum, plasma membrane | 51.51 | 51.68 |
| CDY04397 | Canola | cytosol, plasma membrane, plastid | 51.17 | 51.34 |
| AT4G22756.1 | Thale cress | plasma membrane | 51.17 | 51.17 |
| Solyc01g091320.2.1 | Tomato | cytosol | 51.17 | 51.0 |
| CDY41295 | Canola | cytosol | 42.81 | 49.61 |
| AT4G22755.1 | Thale cress | cytosol, endoplasmic reticulum, plasma membrane | 48.16 | 49.48 |
| PGSC0003DMT400033236 | Potato | cytosol | 49.5 | 49.33 |
| KRH40602 | Soybean | cytosol, endoplasmic reticulum, plasma membrane | 47.83 | 48.81 |
| CDX82968 | Canola | plasma membrane | 51.17 | 40.69 |
| KRH57571 | Soybean | plastid | 15.05 | 40.18 |
| Bra013643.1-P | Field mustard | cytosol | 52.84 | 35.59 |
| TraesCS4D01G134600.1 | Wheat | endoplasmic reticulum | 31.1 | 34.96 |
| CDX94121 | Canola | cytosol | 23.08 | 27.94 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G008900.1 | EnsemblPlantsGene:TraesCS1D01G008900 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005506 |
| GO:GO:0006629 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008610 | GO:GO:0009058 | GO:GO:0016491 |
| GO:GO:0055114 | InterPro:Fatty_acid_hydroxylase | PANTHER:PTHR11863 | PANTHER:PTHR11863:SF51 | PFAM:PF04116 | SEG:seg |
| TMHMM:TMhelix | MapMan:5.5.2.1 | : | : | : | : |
Description
No Description!
Coordinates
chr1D:+:4635334..4637210
Molecular Weight (calculated)
33695.0 Da
IEP (calculated)
8.047
GRAVY (calculated)
0.161
Length
299 amino acids
Sequence
(BLAST)
(BLAST)
001: MLPYSTASEA EAALGRSMSY AEGAWFRYSA GMPDYYLYCH IVPMLLIVYT LLSVPLALFE LGAPSIALRY KLQPRVQLSP AAFLRCYMDT MRILLVTIAP
101: LHLVSYPAVK MAGIRTGLPL PSVGETVAQL VVYLLVEDYL GYWIHRLLHT KWGYDNIHRV HHEYTAPIAF AAPYGHWSDV LILGAPSLVG PSIVPCHITT
201: LWLWLVIRQI EAVDTHSGFK FPFNPTNYIP FHGGAEYHDY HHFVGEHSQS NFSSLFTFCD YLHGTDKGYR YHMANLVKST MKMKGAATTT MATPRSEAK
101: LHLVSYPAVK MAGIRTGLPL PSVGETVAQL VVYLLVEDYL GYWIHRLLHT KWGYDNIHRV HHEYTAPIAF AAPYGHWSDV LILGAPSLVG PSIVPCHITT
201: LWLWLVIRQI EAVDTHSGFK FPFNPTNYIP FHGGAEYHDY HHFVGEHSQS NFSSLFTFCD YLHGTDKGYR YHMANLVKST MKMKGAATTT MATPRSEAK
001: MIPYATVEEA SIALGRNLTR LETLWFDYSA TKSDYYLYCH NILFLFLVFS LVPLPLVFVE LARSASGLFN RYKIQPKVNY SLSDMFKCYK DVMTMFILVV
101: GPLQLVSYPS IQMIEIRSGL PLPTITEMLS QLVVYFLIED YTNYWVHRFF HSKWGYDKIH RVHHEYTAPI GYAAPYAHWA EVLLLGIPTF MGPAIAPGHM
201: ITFWLWIALR QMEAIETHSG YDFPWSPTKY IPFYGGAEYH DYHHYVGGQS QSNFASVFTY CDYIYGTDKG YRFQKKLLEQ IKESSKKSNK HNGGIKSD
101: GPLQLVSYPS IQMIEIRSGL PLPTITEMLS QLVVYFLIED YTNYWVHRFF HSKWGYDKIH RVHHEYTAPI GYAAPYAHWA EVLLLGIPTF MGPAIAPGHM
201: ITFWLWIALR QMEAIETHSG YDFPWSPTKY IPFYGGAEYH DYHHYVGGQS QSNFASVFTY CDYIYGTDKG YRFQKKLLEQ IKESSKKSNK HNGGIKSD
Arabidopsis Description
SMO1-1SMO1-1 [Source:UniProtKB/TrEMBL;Acc:A0A178UWJ7]
SUBAcon: [endoplasmic reticulum,cytosol,plasma membrane]
SUBAcon: [endoplasmic reticulum,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.