Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- extracellular 1
- endoplasmic reticulum 2
- vacuole 1
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX97357 | Canola | cytosol | 87.92 | 93.57 |
| CDY04397 | Canola | cytosol, plasma membrane, plastid | 92.62 | 92.62 |
| Bra033117.1-P | Field mustard | cytosol | 91.95 | 91.95 |
| AT4G22756.1 | Thale cress | plasma membrane | 86.24 | 85.95 |
| AT4G22755.1 | Thale cress | cytosol, endoplasmic reticulum, plasma membrane | 73.49 | 75.26 |
| PGSC0003DMT400010023 | Potato | endoplasmic reticulum | 53.36 | 74.65 |
| Solyc08g079570.2.1 | Tomato | cytosol | 71.81 | 72.3 |
| GSMUA_Achr5P19760_001 | Banana | plasma membrane | 67.45 | 66.34 |
| HORVU1Hr1G052890.1 | Barley | plasma membrane | 66.44 | 65.78 |
| GSMUA_Achr11P... | Banana | plasma membrane | 66.78 | 65.68 |
| TraesCS1B01G219200.2 | Wheat | plasma membrane | 66.11 | 65.67 |
| TraesCS1D01G208900.1 | Wheat | plasma membrane | 66.11 | 65.45 |
| TraesCS1A01G205700.1 | Wheat | plasma membrane | 66.11 | 65.45 |
| Os10t0545200-01 | Rice | cytosol, plasma membrane, plastid | 65.77 | 65.12 |
| EER94557 | Sorghum | cytosol | 64.77 | 64.12 |
| GSMUA_Achr8P19400_001 | Banana | plastid | 50.0 | 62.34 |
| GSMUA_Achr5P18800_001 | Banana | cytosol, peroxisome, plasma membrane | 60.74 | 60.33 |
| KRH40602 | Soybean | cytosol, endoplasmic reticulum, plasma membrane | 59.06 | 60.07 |
| HORVU4Hr1G018180.1 | Barley | cytosol, golgi, plastid | 34.9 | 59.09 |
| TraesCS4B01G332500.1 | Wheat | plasma membrane | 55.37 | 56.9 |
| TraesCS4D01G329200.1 | Wheat | plasma membrane | 54.7 | 56.21 |
| HORVU4Hr1G080880.2 | Barley | plasma membrane | 55.03 | 56.16 |
| GSMUA_Achr11P... | Banana | cytosol, peroxisome, plasma membrane | 56.71 | 55.41 |
| HORVU1Hr1G001170.1 | Barley | cytosol | 52.35 | 55.12 |
| HORVU7Hr1G000980.3 | Barley | plasma membrane | 53.02 | 55.05 |
| Os03t0108500-01 | Rice | cytosol | 55.37 | 55.0 |
| TraesCS5A01G503600.2 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 54.7 | 54.52 |
| TraesCS1D01G007100.1 | Wheat | cytosol, plasma membrane, plastid | 53.02 | 53.2 |
| TraesCS4B01G097200.1 | Wheat | cytosol, golgi, plasma membrane | 53.02 | 52.49 |
| TraesCS5D01G422900.1 | Wheat | plasma membrane | 50.67 | 52.07 |
| TraesCS4D01G093600.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 52.35 | 51.83 |
| TraesCS4A01G218400.1 | Wheat | cytosol, golgi, plasma membrane | 52.35 | 51.83 |
| TraesCS1D01G008900.1 | Wheat | plasma membrane | 51.68 | 51.51 |
| TraesCSU01G085800.1 | Wheat | cytosol, plasma membrane, plastid | 51.34 | 51.17 |
| HORVU4Hr1G018150.1 | Barley | cytosol, golgi, plasma membrane | 51.68 | 51.16 |
| TraesCS5A01G414500.1 | Wheat | plasma membrane | 49.66 | 51.03 |
| OQU80062 | Sorghum | plasma membrane | 51.01 | 50.33 |
| TraesCS7A01G013400.1 | Wheat | plasma membrane | 50.34 | 50.0 |
| OQU86919 | Sorghum | golgi, peroxisome, plasma membrane | 48.66 | 49.15 |
| Zm00001d040979_P001 | Maize | cytosol, plasma membrane, plastid | 35.23 | 48.17 |
| OQU77931 | Sorghum | cytosol, endoplasmic reticulum, plasma membrane | 36.58 | 47.81 |
| Zm00001d041458_P001 | Maize | plasma membrane | 46.98 | 47.78 |
| OQU79557 | Sorghum | golgi, peroxisome, plasma membrane | 47.99 | 47.51 |
| Zm00001d029810_P001 | Maize | mitochondrion | 65.1 | 47.32 |
| OQU79560 | Sorghum | endoplasmic reticulum, plasma membrane, plastid | 42.62 | 43.49 |
| HORVU4Hr1G090810.1 | Barley | cytosol | 54.36 | 42.52 |
| AT1G07420.1 | Thale cress | endoplasmic reticulum, golgi | 36.91 | 41.35 |
| AT2G29390.1 | Thale cress | cytosol | 35.23 | 38.6 |
Protein Annotations
| MapMan:5.5.2.1 | EntrezGene:826819 | UniProt:A0A178UWJ7 | ProteinID:AEE83097.1 | EMBL:AF039199 | ArrayExpress:AT4G12110 |
| EnsemblPlantsGene:AT4G12110 | RefSeq:AT4G12110 | TAIR:AT4G12110 | RefSeq:AT4G12110-TAIR-G | EnsemblPlants:AT4G12110.1 | TAIR:AT4G12110.1 |
| EMBL:AY087412 | EMBL:AY125499 | EMBL:BT000546 | ProteinID:CAB40952.1 | ProteinID:CAB78254.1 | InterPro:Fatty_acid_hydroxylase |
| GO:GO:0000254 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004497 | GO:GO:0005488 | GO:GO:0005506 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 |
| GO:GO:0006629 | GO:GO:0006694 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008202 | GO:GO:0008610 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016126 | GO:GO:0016491 |
| GO:GO:0055114 | GO:GO:0080064 | RefSeq:NP_192948.1 | ProteinID:OAO97983.1 | PFAM:PF04116 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR11863 |
| PANTHER:PTHR11863:SF67 | UniProt:Q8L7W5 | Symbol:SMO1-1 | TMHMM:TMhelix | UniParc:UPI00000AC30F | SEG:seg |
Description
SMO1-1SMO1-1 [Source:UniProtKB/TrEMBL;Acc:A0A178UWJ7]
Coordinates
chr4:+:7254029..7256406
Molecular Weight (calculated)
34648.8 Da
IEP (calculated)
7.747
GRAVY (calculated)
-0.036
Length
298 amino acids
Sequence
(BLAST)
(BLAST)
001: MIPYATVEEA SIALGRNLTR LETLWFDYSA TKSDYYLYCH NILFLFLVFS LVPLPLVFVE LARSASGLFN RYKIQPKVNY SLSDMFKCYK DVMTMFILVV
101: GPLQLVSYPS IQMIEIRSGL PLPTITEMLS QLVVYFLIED YTNYWVHRFF HSKWGYDKIH RVHHEYTAPI GYAAPYAHWA EVLLLGIPTF MGPAIAPGHM
201: ITFWLWIALR QMEAIETHSG YDFPWSPTKY IPFYGGAEYH DYHHYVGGQS QSNFASVFTY CDYIYGTDKG YRFQKKLLEQ IKESSKKSNK HNGGIKSD
101: GPLQLVSYPS IQMIEIRSGL PLPTITEMLS QLVVYFLIED YTNYWVHRFF HSKWGYDKIH RVHHEYTAPI GYAAPYAHWA EVLLLGIPTF MGPAIAPGHM
201: ITFWLWIALR QMEAIETHSG YDFPWSPTKY IPFYGGAEYH DYHHYVGGQS QSNFASVFTY CDYIYGTDKG YRFQKKLLEQ IKESSKKSNK HNGGIKSD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.