Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 1
- endoplasmic reticulum 2
- vacuole 1
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G329200.1 | Wheat | plasma membrane | 92.31 | 95.17 |
| TraesCS4B01G332500.1 | Wheat | plasma membrane | 91.64 | 94.48 |
| HORVU4Hr1G080880.2 | Barley | plasma membrane | 87.63 | 89.73 |
| Os03t0108500-01 | Rice | cytosol | 72.24 | 72.0 |
| TraesCS7A01G013400.1 | Wheat | plasma membrane | 67.22 | 67.0 |
| TraesCS1A01G205700.1 | Wheat | plasma membrane | 66.56 | 66.11 |
| TraesCS4A01G218400.1 | Wheat | cytosol, golgi, plasma membrane | 63.88 | 63.46 |
| TraesCS5A01G414500.1 | Wheat | plasma membrane | 61.2 | 63.1 |
| GSMUA_Achr11P... | Banana | plasma membrane | 63.21 | 62.38 |
| GSMUA_Achr5P19760_001 | Banana | plasma membrane | 63.21 | 62.38 |
| CDY71421 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 37.79 | 62.09 |
| OQU77931 | Sorghum | cytosol, endoplasmic reticulum, plasma membrane | 46.49 | 60.96 |
| PGSC0003DMT400010023 | Potato | endoplasmic reticulum | 41.47 | 58.22 |
| KRH04041 | Soybean | endoplasmic reticulum | 42.14 | 57.8 |
| KRH57309 | Soybean | endoplasmic reticulum | 55.85 | 56.23 |
| CDY41294 | Canola | cytosol | 55.52 | 55.7 |
| VIT_00s2125g00010.t01 | Wine grape | cytosol | 40.47 | 54.75 |
| AT4G12110.1 | Thale cress | cytosol, endoplasmic reticulum, plasma membrane | 54.52 | 54.7 |
| CDX97357 | Canola | cytosol | 51.17 | 54.64 |
| Solyc08g079570.2.1 | Tomato | cytosol | 53.85 | 54.39 |
| Bra033117.1-P | Field mustard | cytosol | 54.18 | 54.36 |
| CDY04397 | Canola | cytosol, plasma membrane, plastid | 53.85 | 54.03 |
| AT4G22756.1 | Thale cress | plasma membrane | 52.51 | 52.51 |
| AT4G22755.1 | Thale cress | cytosol, endoplasmic reticulum, plasma membrane | 50.84 | 52.23 |
| KRH40602 | Soybean | cytosol, endoplasmic reticulum, plasma membrane | 50.5 | 51.54 |
| Solyc01g091320.2.1 | Tomato | cytosol | 51.17 | 51.0 |
| PGSC0003DMT400033236 | Potato | cytosol | 50.17 | 50.0 |
| CDY41295 | Canola | cytosol | 43.14 | 50.0 |
| CDX82968 | Canola | plasma membrane | 55.18 | 43.88 |
| KRH57571 | Soybean | plastid | 15.72 | 41.96 |
| Bra013643.1-P | Field mustard | cytosol | 55.18 | 37.16 |
| TraesCS4A01G179800.1 | Wheat | endoplasmic reticulum | 32.78 | 36.84 |
| CDX94121 | Canola | cytosol | 24.75 | 29.96 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G503600.2 | EnsemblPlantsGene:TraesCS5A01G503600 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005506 |
| GO:GO:0006629 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008610 | GO:GO:0009058 | GO:GO:0016491 |
| GO:GO:0055114 | InterPro:Fatty_acid_hydroxylase | PANTHER:PTHR11863 | PANTHER:PTHR11863:SF51 | PFAM:PF04116 | SEG:seg |
| TMHMM:TMhelix | MapMan:5.5.2.1 | : | : | : | : |
Description
No Description!
Coordinates
chr5A:-:669193243..669194642
Molecular Weight (calculated)
33401.7 Da
IEP (calculated)
8.229
GRAVY (calculated)
0.288
Length
299 amino acids
Sequence
(BLAST)
(BLAST)
001: MLPYATAAEA EAALGRAMTR AEAAWLRYSA FVPDHLLYCH NVAILLILYT IAPLPLALLE LRARAAPDGV AAAVMRPSTY KLQPRAQLSP AAFLRCYLDT
101: GRVLLLTVGA LSLVSYPAVK MVGIRTGLPL PSAGEVAAQM LVYLLVEDYL GYWIHRLLHT RWGYHNIHRV HHEFTAPFGY AAPYAHWAEV LILGVPAFTG
201: PAIVPCHMTT LWLWFVLRHL EAIDIHSGFN FPFNPTKLIP FYGGADHHDY HHRVGGQSQS NFSSVFTFCD YLYGTDKGYR YHKASLEKGD AIFFILCLS
101: GRVLLLTVGA LSLVSYPAVK MVGIRTGLPL PSAGEVAAQM LVYLLVEDYL GYWIHRLLHT RWGYHNIHRV HHEFTAPFGY AAPYAHWAEV LILGVPAFTG
201: PAIVPCHMTT LWLWFVLRHL EAIDIHSGFN FPFNPTKLIP FYGGADHHDY HHRVGGQSQS NFSSVFTFCD YLYGTDKGYR YHKASLEKGD AIFFILCLS
001: MLLLPFMVNT YFSFVPMQTK NNTPAAQGKC ITRLLLYHFS VNLPLMLASY PVFRAMGMRS SFPLPSWKEV SAQILFYFII EDFVFYWGHR ILHSKWLYKN
101: VHSVHHEYAT PFGLTSEYAH PAEILFLGFA TIVGPALTGP HLITLWLWMV LRVLETVEAH CGYHFPWSLS NFLPLYGGAD FHDYHHRLLY TKSGNYSSTF
201: VYMDWIFGTD KGYRRLKTLK ENGDMKQT
101: VHSVHHEYAT PFGLTSEYAH PAEILFLGFA TIVGPALTGP HLITLWLWMV LRVLETVEAH CGYHFPWSLS NFLPLYGGAD FHDYHHRLLY TKSGNYSSTF
201: VYMDWIFGTD KGYRRLKTLK ENGDMKQT
Arabidopsis Description
SMO2-2Methylsterol monooxygenase 2-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8VWZ8]
SUBAcon: [endoplasmic reticulum,plastid]
SUBAcon: [endoplasmic reticulum,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.