Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 1
- endoplasmic reticulum 2
- vacuole 2
- extracellular 1
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| endoplasmic reticulum:
28499913
|
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH04041 | Soybean | endoplasmic reticulum | 71.04 | 96.79 |
| KRH57571 | Soybean | plastid | 33.33 | 88.39 |
| VIT_00s2125g00010.t01 | Wine grape | cytosol | 59.26 | 79.64 |
| Os10t0545200-01 | Rice | cytosol, plasma membrane, plastid | 70.03 | 69.1 |
| TraesCS1B01G219200.2 | Wheat | plasma membrane | 69.7 | 69.0 |
| TraesCS1D01G208900.1 | Wheat | plasma membrane | 69.36 | 68.44 |
| TraesCS1A01G205700.1 | Wheat | plasma membrane | 69.36 | 68.44 |
| GSMUA_Achr8P19400_001 | Banana | plastid | 54.55 | 67.78 |
| HORVU1Hr1G052890.1 | Barley | plasma membrane | 68.69 | 67.77 |
| EER94557 | Sorghum | cytosol | 68.35 | 67.44 |
| GSMUA_Achr11P... | Banana | plasma membrane | 67.68 | 66.34 |
| GSMUA_Achr5P19760_001 | Banana | plasma membrane | 67.34 | 66.01 |
| KRH40602 | Soybean | cytosol, endoplasmic reticulum, plasma membrane | 62.29 | 63.14 |
| GSMUA_Achr5P18800_001 | Banana | cytosol, peroxisome, plasma membrane | 63.64 | 63.0 |
| HORVU4Hr1G018180.1 | Barley | cytosol, golgi, plastid | 37.04 | 62.5 |
| GSMUA_Achr11P... | Banana | cytosol, peroxisome, plasma membrane | 60.27 | 58.69 |
| Os03t0108500-01 | Rice | cytosol | 59.26 | 58.67 |
| TraesCS4B01G332500.1 | Wheat | plasma membrane | 56.9 | 58.28 |
| TraesCS4D01G329200.1 | Wheat | plasma membrane | 56.57 | 57.93 |
| HORVU4Hr1G080880.2 | Barley | plasma membrane | 56.9 | 57.88 |
| HORVU1Hr1G001170.1 | Barley | cytosol | 54.55 | 57.24 |
| HORVU7Hr1G000980.3 | Barley | plasma membrane | 54.88 | 56.79 |
| TraesCS5A01G503600.2 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 56.23 | 55.85 |
| TraesCS4A01G218400.1 | Wheat | cytosol, golgi, plasma membrane | 56.57 | 55.81 |
| TraesCS4B01G097200.1 | Wheat | cytosol, golgi, plasma membrane | 56.23 | 55.48 |
| HORVU4Hr1G018150.1 | Barley | cytosol, golgi, plasma membrane | 56.23 | 55.48 |
| TraesCS4D01G093600.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 55.89 | 55.15 |
| TraesCS1D01G007100.1 | Wheat | cytosol, plasma membrane, plastid | 54.88 | 54.88 |
| TraesCS1D01G008900.1 | Wheat | plasma membrane | 55.22 | 54.85 |
| TraesCSU01G085800.1 | Wheat | cytosol, plasma membrane, plastid | 54.21 | 53.85 |
| OQU80062 | Sorghum | plasma membrane | 53.87 | 52.98 |
| TraesCS7A01G013400.1 | Wheat | plasma membrane | 52.19 | 51.67 |
| Zm00001d041458_P001 | Maize | plasma membrane | 50.84 | 51.54 |
| Zm00001d040979_P001 | Maize | cytosol, plasma membrane, plastid | 37.71 | 51.38 |
| OQU86919 | Sorghum | golgi, peroxisome, plasma membrane | 50.84 | 51.19 |
| OQU77931 | Sorghum | cytosol, endoplasmic reticulum, plasma membrane | 39.06 | 50.88 |
| TraesCS5D01G422900.1 | Wheat | plasma membrane | 49.49 | 50.69 |
| TraesCS5A01G414500.1 | Wheat | plasma membrane | 49.16 | 50.34 |
| Zm00001d029810_P001 | Maize | mitochondrion | 69.02 | 50.0 |
| OQU79557 | Sorghum | golgi, peroxisome, plasma membrane | 50.51 | 49.83 |
| OQU79560 | Sorghum | endoplasmic reticulum, plasma membrane, plastid | 45.79 | 46.58 |
| HORVU4Hr1G090810.1 | Barley | cytosol | 55.22 | 43.04 |
| KRH74668 | Soybean | extracellular, plasma membrane | 35.35 | 38.75 |
| KRH69485 | Soybean | mitochondrion | 34.68 | 38.01 |
| KRH74671 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 25.25 | 26.5 |
Protein Annotations
| EntrezGene:100793785 | MapMan:5.5.2.1 | EMBL:ACUP02002824 | InterPro:Fatty_acid_hydroxylase | EnsemblPlantsGene:GLYMA_05G053300 | GO:GO:0000254 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005506 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0006629 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008610 | GO:GO:0009058 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016126 |
| GO:GO:0016491 | GO:GO:0055114 | UniProt:K7KN04 | EnsemblPlants:KRH57309 | ProteinID:KRH57309 | ProteinID:KRH57309.1 |
| PFAM:PF04116 | PANTHER:PTHR11863 | PANTHER:PTHR11863:SF67 | TMHMM:TMhelix | UniParc:UPI00023396FB | SEG:seg |
Description
hypothetical protein
Coordinates
chr5:-:4810549..4814012
Molecular Weight (calculated)
34586.8 Da
IEP (calculated)
8.383
GRAVY (calculated)
0.008
Length
297 amino acids
Sequence
(BLAST)
(BLAST)
001: MLPYGSIPEA AAALGRNLTS AETLWFNYSA SKSDYFLYCH NILFLFLVFS LVPLPLVFLE LKRFSFVASH KIQPKVRLSL AETFKCYKDV MRMFFLVVGP
101: LQLISYPSIQ MIGIRTGLQL PSWREILSQL LVYFLVEDYT NYWIHRFLHN DWGYEKIHRV HHEYHAPIGF AAPYAHWAEI LILGIPSFLG PAMVPGHIIT
201: FWLWIALRQI EAIDTHSGYD FPRSITKYIP FYGGAEYHDY HHYVGRQSQS NFASVFTYCD YIYGTDKGYR YQKKILQKLK EELANGVEQN GGSYKTD
101: LQLISYPSIQ MIGIRTGLQL PSWREILSQL LVYFLVEDYT NYWIHRFLHN DWGYEKIHRV HHEYHAPIGF AAPYAHWAEI LILGIPSFLG PAMVPGHIIT
201: FWLWIALRQI EAIDTHSGYD FPRSITKYIP FYGGAEYHDY HHYVGRQSQS NFASVFTYCD YIYGTDKGYR YQKKILQKLK EELANGVEQN GGSYKTD
001: MIPYATVEEA SIALGRNLTR LETLWFDYSA TKSDYYLYCH NILFLFLVFS LVPLPLVFVE LARSASGLFN RYKIQPKVNY SLSDMFKCYK DVMTMFILVV
101: GPLQLVSYPS IQMIEIRSGL PLPTITEMLS QLVVYFLIED YTNYWVHRFF HSKWGYDKIH RVHHEYTAPI GYAAPYAHWA EVLLLGIPTF MGPAIAPGHM
201: ITFWLWIALR QMEAIETHSG YDFPWSPTKY IPFYGGAEYH DYHHYVGGQS QSNFASVFTY CDYIYGTDKG YRFQKKLLEQ IKESSKKSNK HNGGIKSD
101: GPLQLVSYPS IQMIEIRSGL PLPTITEMLS QLVVYFLIED YTNYWVHRFF HSKWGYDKIH RVHHEYTAPI GYAAPYAHWA EVLLLGIPTF MGPAIAPGHM
201: ITFWLWIALR QMEAIETHSG YDFPWSPTKY IPFYGGAEYH DYHHYVGGQS QSNFASVFTY CDYIYGTDKG YRFQKKLLEQ IKESSKKSNK HNGGIKSD
Arabidopsis Description
SMO1-1SMO1-1 [Source:UniProtKB/TrEMBL;Acc:A0A178UWJ7]
SUBAcon: [endoplasmic reticulum,cytosol,plasma membrane]
SUBAcon: [endoplasmic reticulum,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.