Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- endoplasmic reticulum 3
- cytosol 1
- vacuole 2
- extracellular 1
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G218400.1 | Wheat | cytosol, golgi, plasma membrane | 97.34 | 97.34 |
| TraesCS4B01G097200.1 | Wheat | cytosol, golgi, plasma membrane | 97.01 | 97.01 |
| TraesCS4D01G093600.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 96.35 | 96.35 |
| HORVU4Hr1G018180.1 | Barley | cytosol, golgi, plastid | 55.81 | 95.45 |
| HORVU7Hr1G000980.3 | Barley | plasma membrane | 62.79 | 65.85 |
| HORVU4Hr1G080880.2 | Barley | plasma membrane | 62.79 | 64.73 |
| GSMUA_Achr5P19760_001 | Banana | plasma membrane | 63.12 | 62.71 |
| HORVU1Hr1G052890.1 | Barley | plasma membrane | 60.8 | 60.8 |
| HORVU1Hr1G001170.1 | Barley | cytosol | 56.81 | 60.42 |
| GSMUA_Achr11P... | Banana | plasma membrane | 60.8 | 60.4 |
| Zm00001d040979_P001 | Maize | cytosol, plasma membrane, plastid | 43.19 | 59.63 |
| OQU86919 | Sorghum | golgi, peroxisome, plasma membrane | 57.14 | 58.31 |
| CDY71421 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 35.22 | 58.24 |
| PGSC0003DMT400010023 | Potato | endoplasmic reticulum | 40.86 | 57.75 |
| KRH57309 | Soybean | endoplasmic reticulum | 55.48 | 56.23 |
| OQU80062 | Sorghum | plasma membrane | 56.15 | 55.96 |
| OQU79557 | Sorghum | golgi, peroxisome, plasma membrane | 54.15 | 54.15 |
| CDY41294 | Canola | cytosol | 53.16 | 53.69 |
| KRH04041 | Soybean | endoplasmic reticulum | 38.54 | 53.21 |
| Bra033117.1-P | Field mustard | cytosol | 51.83 | 52.35 |
| AT4G22756.1 | Thale cress | plasma membrane | 51.83 | 52.17 |
| Solyc08g079570.2.1 | Tomato | cytosol | 51.16 | 52.03 |
| AT4G12110.1 | Thale cress | cytosol, endoplasmic reticulum, plasma membrane | 51.16 | 51.68 |
| CDX97357 | Canola | cytosol | 47.84 | 51.43 |
| CDY04397 | Canola | cytosol, plasma membrane, plastid | 50.5 | 51.01 |
| Zm00001d041458_P001 | Maize | plasma membrane | 49.5 | 50.85 |
| VIT_00s2125g00010.t01 | Wine grape | cytosol | 37.21 | 50.68 |
| AT4G22755.1 | Thale cress | cytosol, endoplasmic reticulum, plasma membrane | 48.17 | 49.83 |
| OQU79560 | Sorghum | endoplasmic reticulum, plasma membrane, plastid | 48.17 | 49.66 |
| KRH40602 | Soybean | cytosol, endoplasmic reticulum, plasma membrane | 47.84 | 49.15 |
| Solyc01g091320.2.1 | Tomato | cytosol | 47.84 | 48.0 |
| CDY41295 | Canola | cytosol | 40.53 | 47.29 |
| PGSC0003DMT400033236 | Potato | cytosol | 46.84 | 47.0 |
| HORVU4Hr1G090810.1 | Barley | cytosol | 59.47 | 46.98 |
| CDX82968 | Canola | plasma membrane | 53.16 | 42.55 |
| KRH57571 | Soybean | plastid | 15.28 | 41.07 |
| Bra013643.1-P | Field mustard | cytosol | 53.16 | 36.04 |
| CDX94121 | Canola | cytosol | 24.92 | 30.36 |
Protein Annotations
| EMBL:AK355859 | EnsemblPlants:HORVU4Hr1G018150.1 | EnsemblPlantsGene:HORVU4Hr1G018150 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0005506 | GO:GO:0006629 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008610 | GO:GO:0009058 |
| GO:GO:0016491 | GO:GO:0055114 | InterPro:Fatty_acid_hydroxylase | PANTHER:PTHR11863 | PANTHER:PTHR11863:SF51 | PFAM:PF04116 |
| SEG:seg | UniParc:UPI0002004B9D | UniProt:F2CW56 | MapMan:5.5.2.1 | : | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2CW56]
Coordinates
chrchr4H:+:81552157..81566437
Molecular Weight (calculated)
33991.0 Da
IEP (calculated)
7.754
GRAVY (calculated)
0.053
Length
301 amino acids
Sequence
(BLAST)
(BLAST)
001: MLPYATTGDA EAALGRALTW AEAAWLRYSA SVPDRYLHWP NIAITLVVYT LAPLPLALFD LAAPAVAAPY KLQPKVQHPP ATFFRCYMDA VRVSLLIIGP
101: YQLISYPAAK IMDIRTGLPL PSMGEIAAQL TVYFLVEDYL NYWLHRLLHT KWCYEKIHHV HHEFTAPMAY AAWYGHWAEM LILAVPSLAG PALVPCHVTT
201: LWIWFAARLV ESLNIHSGFK LPFNAEKYIP FYGGAEHHDY HHYIGGQSKS NFAPVFTYCD YIYGTDKGYR YHKATLAKLK ELAGNEVQKG VDNGFNSGKQ
301: E
101: YQLISYPAAK IMDIRTGLPL PSMGEIAAQL TVYFLVEDYL NYWLHRLLHT KWCYEKIHHV HHEFTAPMAY AAWYGHWAEM LILAVPSLAG PALVPCHVTT
201: LWIWFAARLV ESLNIHSGFK LPFNAEKYIP FYGGAEHHDY HHYIGGQSKS NFAPVFTYCD YIYGTDKGYR YHKATLAKLK ELAGNEVQKG VDNGFNSGKQ
301: E
001: MASFVESGWQ YLVTHFSDFQ LACIGSFLLH ESVFFLSGLP FIFLERQGFL SKYKIQTKNN TPAAQGKCIT RLLLYHFSVN LPLMLASYPV FRAMGMRSSF
101: PLPSWKEVSA QILFYFIIED FVFYWGHRIL HSKWLYKNVH SVHHEYATPF GLTSEYAHPA EILFLGFATI VGPALTGPHL ITLWLWMVLR VLETVEAHCG
201: YHFPWSLSNF LPLYGGADFH DYHHRLLYTK SGNYSSTFVY MDWIFGTDKG YRRLKTLKEN GDMKQT
101: PLPSWKEVSA QILFYFIIED FVFYWGHRIL HSKWLYKNVH SVHHEYATPF GLTSEYAHPA EILFLGFATI VGPALTGPHL ITLWLWMVLR VLETVEAHCG
201: YHFPWSLSNF LPLYGGADFH DYHHRLLYTK SGNYSSTFVY MDWIFGTDKG YRRLKTLKEN GDMKQT
Arabidopsis Description
SMO2-2Methylsterol monooxygenase 2-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8VWZ8]
SUBAcon: [endoplasmic reticulum,golgi]
SUBAcon: [endoplasmic reticulum,golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.