Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- endoplasmic reticulum 2
- vacuole 2
- extracellular 1
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G208900.1 | Wheat | plasma membrane | 85.38 | 85.38 |
| TraesCS1B01G219200.2 | Wheat | plasma membrane | 85.05 | 85.33 |
| TraesCS1A01G205700.1 | Wheat | plasma membrane | 85.05 | 85.05 |
| EER94557 | Sorghum | cytosol | 85.05 | 85.05 |
| HORVU1Hr1G052890.1 | Barley | plasma membrane | 84.05 | 84.05 |
| GSMUA_Achr11P... | Banana | plasma membrane | 76.41 | 75.91 |
| GSMUA_Achr5P19760_001 | Banana | plasma membrane | 73.09 | 72.61 |
| CDY71421 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 43.85 | 72.53 |
| PGSC0003DMT400010023 | Potato | endoplasmic reticulum | 50.5 | 71.36 |
| KRH04041 | Soybean | endoplasmic reticulum | 51.49 | 71.1 |
| KRH57309 | Soybean | endoplasmic reticulum | 69.1 | 70.03 |
| CDY41294 | Canola | cytosol | 66.11 | 66.78 |
| Solyc08g079570.2.1 | Tomato | cytosol | 65.45 | 66.55 |
| VIT_00s2125g00010.t01 | Wine grape | cytosol | 48.84 | 66.52 |
| CDX97357 | Canola | cytosol | 61.79 | 66.43 |
| AT4G12110.1 | Thale cress | cytosol, endoplasmic reticulum, plasma membrane | 65.12 | 65.77 |
| Bra033117.1-P | Field mustard | cytosol | 64.78 | 65.44 |
| Os03t0108500-01 | Rice | cytosol | 64.78 | 65.0 |
| CDY04397 | Canola | cytosol, plasma membrane, plastid | 64.12 | 64.77 |
| AT4G22756.1 | Thale cress | plasma membrane | 64.12 | 64.55 |
| AT4G22755.1 | Thale cress | cytosol, endoplasmic reticulum, plasma membrane | 60.47 | 62.54 |
| CDY41295 | Canola | cytosol | 52.49 | 61.24 |
| Zm00001d029810_P001 | Maize | mitochondrion | 82.72 | 60.73 |
| KRH40602 | Soybean | cytosol, endoplasmic reticulum, plasma membrane | 56.81 | 58.36 |
| KRH57571 | Soybean | plastid | 20.93 | 56.25 |
| Solyc01g091320.2.1 | Tomato | cytosol | 55.81 | 56.0 |
| PGSC0003DMT400033236 | Potato | cytosol | 54.82 | 55.0 |
| CDX82968 | Canola | plasma membrane | 64.45 | 51.6 |
| Bra013643.1-P | Field mustard | cytosol | 65.12 | 44.14 |
| Os11t0707600-02 | Rice | cytosol, endoplasmic reticulum, plasma membrane | 33.55 | 37.97 |
| Os07t0101500-01 | Rice | cytosol, endoplasmic reticulum, plasma membrane | 33.55 | 37.69 |
| CDX94121 | Canola | cytosol | 28.57 | 34.82 |
Protein Annotations
| EntrezGene:4349278 | MapMan:5.5.2.1 | ProteinID:AAK20047.1 | ProteinID:AAP54879.1 | EMBL:AK098884 | EMBL:AK121804 |
| ProteinID:BAF27120.1 | ProteinID:BAT11897.1 | InterPro:Fatty_acid_hydroxylase | GO:GO:0000254 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005506 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005783 | GO:GO:0005789 | GO:GO:0006629 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008610 |
| GO:GO:0009058 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016126 | GO:GO:0016491 | GO:GO:0055114 |
| EnsemblPlantsGene:Os10g0545200 | EnsemblPlants:Os10t0545200-01 | PFAM:PF04116 | PANTHER:PTHR11863 | PANTHER:PTHR11863:SF67 | UniProt:Q9AV39 |
| TMHMM:TMhelix | UniParc:UPI000009D264 | RefSeq:XP_015614342.1 | SEG:seg | : | : |
Description
Glossy1-homologous gene 10Similar to 4,4-dimethyl-sterol C4-methyl-oxidase (Fragment). (Os10t0545200-01);Similar to 4,4-dimethyl-sterol C4-methyl-oxidase (Fragment). (Os10t0545200-02)
Coordinates
chr10:+:21308453..21311336
Molecular Weight (calculated)
34410.7 Da
IEP (calculated)
7.238
GRAVY (calculated)
0.128
Length
301 amino acids
Sequence
(BLAST)
(BLAST)
001: MLPYATAAEA EAALGRAMTA AESLWFRYSA GIPDYVLFWH NILFLFVVFT LAPLPVALLE LRAPAAVGPF KLQPKVRLSR EEFFRCYRDV MRLFFLVIGP
101: LQLVSYPTVK MVGIHTGLPL PSLGEMAAQL LVYFLVEDYL NYWIHRLLHG EWGYEKIHRV HHEFTAPIGF AAPYAHWAEV LILGIPSFVG PALAPGHMIT
201: FWLWIVLRQM EAIETHSGFD FPFNLTKYIP FYGGAEYHDY HHYVGRQSQS NFASVFTYCD YLYGTDKGYR YHKAYQAKMK ALGQTEGEKA DSNGLSYAKL
301: D
101: LQLVSYPTVK MVGIHTGLPL PSLGEMAAQL LVYFLVEDYL NYWIHRLLHG EWGYEKIHRV HHEFTAPIGF AAPYAHWAEV LILGIPSFVG PALAPGHMIT
201: FWLWIVLRQM EAIETHSGFD FPFNLTKYIP FYGGAEYHDY HHYVGRQSQS NFASVFTYCD YLYGTDKGYR YHKAYQAKMK ALGQTEGEKA DSNGLSYAKL
301: D
001: MIPYATVEEA SIALGRNLTR LETLWFDYSA TKSDYYLYCH NILFLFLVFS LVPLPLVFVE LARSASGLFN RYKIQPKVNY SLSDMFKCYK DVMTMFILVV
101: GPLQLVSYPS IQMIEIRSGL PLPTITEMLS QLVVYFLIED YTNYWVHRFF HSKWGYDKIH RVHHEYTAPI GYAAPYAHWA EVLLLGIPTF MGPAIAPGHM
201: ITFWLWIALR QMEAIETHSG YDFPWSPTKY IPFYGGAEYH DYHHYVGGQS QSNFASVFTY CDYIYGTDKG YRFQKKLLEQ IKESSKKSNK HNGGIKSD
101: GPLQLVSYPS IQMIEIRSGL PLPTITEMLS QLVVYFLIED YTNYWVHRFF HSKWGYDKIH RVHHEYTAPI GYAAPYAHWA EVLLLGIPTF MGPAIAPGHM
201: ITFWLWIALR QMEAIETHSG YDFPWSPTKY IPFYGGAEYH DYHHYVGGQS QSNFASVFTY CDYIYGTDKG YRFQKKLLEQ IKESSKKSNK HNGGIKSD
Arabidopsis Description
SMO1-1SMO1-1 [Source:UniProtKB/TrEMBL;Acc:A0A178UWJ7]
SUBAcon: [endoplasmic reticulum,cytosol,plasma membrane]
SUBAcon: [endoplasmic reticulum,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.