Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 3
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G332500.1 | Wheat | plasma membrane | 94.48 | 94.48 |
| TraesCS5A01G503600.2 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 95.17 | 92.31 |
| HORVU4Hr1G080880.2 | Barley | plasma membrane | 88.97 | 88.36 |
| Os03t0108500-01 | Rice | cytosol | 73.1 | 70.67 |
| TraesCS1D01G007100.1 | Wheat | cytosol, plasma membrane, plastid | 67.24 | 65.66 |
| TraesCS1D01G008900.1 | Wheat | plasma membrane | 67.59 | 65.55 |
| TraesCS1D01G208900.1 | Wheat | plasma membrane | 66.9 | 64.45 |
| GSMUA_Achr5P19760_001 | Banana | plasma membrane | 65.52 | 62.71 |
| TraesCS4D01G093600.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 64.83 | 62.46 |
| GSMUA_Achr11P... | Banana | plasma membrane | 64.83 | 62.05 |
| TraesCS5D01G422900.1 | Wheat | plasma membrane | 61.72 | 61.72 |
| CDY71421 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 38.28 | 60.99 |
| OQU77931 | Sorghum | cytosol, endoplasmic reticulum, plasma membrane | 47.93 | 60.96 |
| KRH04041 | Soybean | endoplasmic reticulum | 43.79 | 58.26 |
| PGSC0003DMT400010023 | Potato | endoplasmic reticulum | 42.07 | 57.28 |
| KRH57309 | Soybean | endoplasmic reticulum | 57.93 | 56.57 |
| CDY41294 | Canola | cytosol | 56.55 | 55.03 |
| AT4G12110.1 | Thale cress | cytosol, endoplasmic reticulum, plasma membrane | 56.21 | 54.7 |
| VIT_00s2125g00010.t01 | Wine grape | cytosol | 41.38 | 54.3 |
| CDX97357 | Canola | cytosol | 52.41 | 54.29 |
| Bra033117.1-P | Field mustard | cytosol | 55.52 | 54.03 |
| Solyc08g079570.2.1 | Tomato | cytosol | 54.83 | 53.72 |
| CDY04397 | Canola | cytosol, plasma membrane, plastid | 55.17 | 53.69 |
| AT4G22756.1 | Thale cress | plasma membrane | 53.79 | 52.17 |
| AT4G22755.1 | Thale cress | cytosol, endoplasmic reticulum, plasma membrane | 52.07 | 51.89 |
| Solyc01g091320.2.1 | Tomato | cytosol | 52.07 | 50.33 |
| CDY41295 | Canola | cytosol | 44.48 | 50.0 |
| KRH40602 | Soybean | cytosol, endoplasmic reticulum, plasma membrane | 50.34 | 49.83 |
| PGSC0003DMT400033236 | Potato | cytosol | 51.03 | 49.33 |
| KRH57571 | Soybean | plastid | 17.24 | 44.64 |
| CDX82968 | Canola | plasma membrane | 56.21 | 43.35 |
| Bra013643.1-P | Field mustard | cytosol | 56.55 | 36.94 |
| TraesCS4D01G134600.1 | Wheat | endoplasmic reticulum | 33.45 | 36.47 |
| CDX94121 | Canola | cytosol | 24.83 | 29.15 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G329200.1 | EnsemblPlantsGene:TraesCS4D01G329200 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005506 |
| GO:GO:0006629 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008610 | GO:GO:0009058 | GO:GO:0016491 |
| GO:GO:0055114 | InterPro:Fatty_acid_hydroxylase | PANTHER:PTHR11863 | PANTHER:PTHR11863:SF51 | PFAM:PF04116 | SEG:seg |
| TMHMM:TMhelix | MapMan:5.5.2.1 | : | : | : | : |
Description
No Description!
Coordinates
chr4D:-:487459729..487461107
Molecular Weight (calculated)
32392.4 Da
IEP (calculated)
8.236
GRAVY (calculated)
0.198
Length
290 amino acids
Sequence
(BLAST)
(BLAST)
001: MLPYATAPEA EAALGRAMTR AEAAWLRYSA SMPDHLLYCH NVAILLLLYT LAPLPLALLE LRARAAPDGV AAAVMRPSTY KLQPRAHLPP AAFVRCYLDT
101: GRVLLLTVGA LSLVSYPAVK MVGIRTGLPL PSAGEVAAQM LVYLLVEDYL GYWIHRLLHT RWGYDNIHRV HHEFTAPFGY AAPYVHWAEV LILGVPAFTG
201: PAIVPCHMTT LWLWFLLRHL EAIDIHSGFN FPFNPTKLIP FYGGADHHDY HHRVGGQSQS NFSSVFTFCD HLYGTDKGYR YHKASLEKAC
101: GRVLLLTVGA LSLVSYPAVK MVGIRTGLPL PSAGEVAAQM LVYLLVEDYL GYWIHRLLHT RWGYDNIHRV HHEFTAPFGY AAPYVHWAEV LILGVPAFTG
201: PAIVPCHMTT LWLWFLLRHL EAIDIHSGFN FPFNPTKLIP FYGGADHHDY HHRVGGQSQS NFSSVFTFCD HLYGTDKGYR YHKASLEKAC
001: MASFVESGWQ YLVTHFSDFQ LACIGSFLLH ESVFFLSGLP FIFLERQGFL SKYKIQTKNN TPAAQGKCIT RLLLYHFSVN LPLMLASYPV FRAMGMRSSF
101: PLPSWKEVSA QILFYFIIED FVFYWGHRIL HSKWLYKNVH SVHHEYATPF GLTSEYAHPA EILFLGFATI VGPALTGPHL ITLWLWMVLR VLETVEAHCG
201: YHFPWSLSNF LPLYGGADFH DYHHRLLYTK SGNYSSTFVY MDWIFGTDKG YRRLKTLKEN GDMKQT
101: PLPSWKEVSA QILFYFIIED FVFYWGHRIL HSKWLYKNVH SVHHEYATPF GLTSEYAHPA EILFLGFATI VGPALTGPHL ITLWLWMVLR VLETVEAHCG
201: YHFPWSLSNF LPLYGGADFH DYHHRLLYTK SGNYSSTFVY MDWIFGTDKG YRRLKTLKEN GDMKQT
Arabidopsis Description
SMO2-2Methylsterol monooxygenase 2-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8VWZ8]
SUBAcon: [endoplasmic reticulum,golgi]
SUBAcon: [endoplasmic reticulum,golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.