Factsheet for PGSC0003DMT400095799

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

extracellular 5
golgi 5
plasma membrane 6
endoplasmic reticulum 5
vacuole 8
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g016310.1.1	Tomato	vacuole	93.84	95.63
PGSC0003DMT400091831	Potato	vacuole	79.66	78.06
KRH46018	Soybean	vacuole	71.46	68.76
KRG98962	Soybean	vacuole	71.46	68.39
VIT_12s0028g00610.t01	Wine grape	extracellular	68.47	67.22
KRH73625	Soybean	vacuole	68.84	65.78
AT3G59080.1	Thale cress	vacuole	64.74	64.86
CDX98347	Canola	vacuole	64.55	63.84
CDX67775	Canola	vacuole	64.74	63.44
Bra003363.1-P	Field mustard	vacuole	64.93	63.39
AT2G42980.1	Thale cress	vacuole	61.38	62.43
CDY53652	Canola	vacuole	60.07	61.92
CDX79836	Canola	vacuole	60.26	61.88
Bra004734.1-P	Field mustard	vacuole	59.89	61.49
GSMUA_Achr3P03130_001	Banana	vacuole	57.84	59.27
KRG98063	Soybean	vacuole	56.9	56.9
GSMUA_Achr10P...	Banana	endoplasmic reticulum, vacuole	55.41	55.0
KRH30714	Soybean	vacuole	55.6	54.88
GSMUA_Achr6P13720_001	Banana	vacuole	54.1	54.41
TraesCS7D01G516100.1	Wheat	vacuole	47.95	52.13
TraesCS7A01G528000.1	Wheat	vacuole	47.57	51.93
EER97501	Sorghum	vacuole	49.81	51.64
TraesCS7B01G444800.1	Wheat	vacuole	47.57	51.62
Os02t0314600-01	Rice	extracellular	49.44	51.56
Zm00001d006330_P001	Maize	vacuole	48.69	51.18
TraesCS7B01G445000.1	Wheat	vacuole	48.13	50.99
Zm00001d022078_P001	Maize	vacuole	48.51	50.78
KRH14503	Soybean	vacuole	69.22	50.75
TraesCS7D01G516400.1	Wheat	vacuole	48.13	50.59
TraesCS7A01G528200.1	Wheat	vacuole	47.95	50.0
EER97174	Sorghum	vacuole	48.32	49.33
HORVU7Hr1G116780.2	Barley	plastid	47.95	47.16
HORVU7Hr1G116810.1	Barley	plastid	25.56	38.48
Zm00001d040433_P001	Maize	cytosol	25.0	37.53
PGSC0003DMT400048585	Potato	vacuole	31.16	36.23
PGSC0003DMT400000651	Potato	vacuole	31.72	35.42
PGSC0003DMT400033734	Potato	vacuole	29.66	32.99
PGSC0003DMT400010420	Potato	endoplasmic reticulum, plastid	28.54	31.16
PGSC0003DMT400014352	Potato	endoplasmic reticulum, vacuole	28.17	31.07
PGSC0003DMT400005606	Potato	nucleus	26.87	30.9
PGSC0003DMT400065088	Potato	extracellular	27.43	30.69
PGSC0003DMT400059566	Potato	extracellular	26.31	29.07
PGSC0003DMT400036706	Potato	vacuole	25.0	28.27
PGSC0003DMT400074390	Potato	vacuole	24.63	28.14

Protein Annotations

EntrezGene:102595346	MapMan:19.4.3.1	Gene3D:2.40.70.10	MEROPS:A01.050	InterPro:Aspartic_peptidase_A1	InterPro:Aspartic_peptidase_AS
GO:GO:0003674	GO:GO:0003824	GO:GO:0004190	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152
GO:GO:0008233	GO:GO:0016787	GO:GO:0019538	InterPro:IPR021109	InterPro:IPR033121	UniProt:M1DX30
InterPro:PEPTIDASE_A1	PFAM:PF14541	PFAM:PF14543	EnsemblPlantsGene:PGSC0003DMG400045370	PGSC:PGSC0003DMG400045370	EnsemblPlants:PGSC0003DMT400095799
PRINTS:PR00792	ScanProsite:PS00141	PFscan:PS51767	PANTHER:PTHR13683	PANTHER:PTHR13683:SF250	InterPro:Pepsin-like_plant
InterPro:Peptidase_aspartic_dom_sf	SUPFAM:SSF50630	SignalP:SignalP-noTM	InterPro:TAXi_C	InterPro:TAXi_N	TMHMM:TMhelix
UniParc:UPI000294CCAC	RefSeq:XP_006354419.1	SEG:seg	:	:	:

Description

Basic 7S globulin 2 small subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400045370]

Coordinates

chr5:-:38795837..38797447

Molecular Weight (calculated)

59356.8 Da

IEP (calculated)

5.196

GRAVY (calculated)

-0.260

Length

536 amino acids

Sequence
(BLAST)

001: MVTKLSIFIL VSLSLFSFGF VASREFGINL NSSASGIEFP QHPSFNVVSS SVNSGCNHVT STSMLTREEQ TSIDSQDKDD FAQSKEAVKF HLRHRSDGKT
101: TEVKDSVFES TSRDLGRIQT LHTRIVEKKN QNSVSRLAKD GEKTVISSQF ELSGKLMATL ESGVSHGSGE YFMDVFVGTP PKHFSLILDT GSDLNWIQCV
201: PCYDCFEQNG PYYDPKDSTS FTNITCHDPM CHLVSSPDPP QPCKTENQTC PYYYWYGDSS NTTGDFALET FSVNLTTPSG NSEIKKVENV MFGCGHWNRG
301: LFHGAAGLLG LGKGPLSFSS QLQSLYGHSF SYCLVNRNSN SSVSSKLIFG EDKELLKHPN LNFTSLVDGK ENPAETFYYV QIKSIIVGDE VLKIPEETWN
401: LSPQGVGGTI IDSGTTLSYF IEPAYEIIKE AFVNKVKGYP LIQDFPILRP CYNVSGVENL ELPSFGITFS DGAVWNFPVE NYFIKLDPED IVCLAILGTP
501: NSAMSIIGNY QQQNFHILYD TKRSRLGYAP TKCADA

Best Arabidopsis Sequence Match ( AT3G59080.1 )
(BLAST)

001: MFSKYSFILC LIFFFVTAFS GDSRALAGNN EQKNISGFSG IDFPNPMRFG SASSSTSNDC GFSSPEKEPT KERTGENKTV KFHLKRRETT TTEKATTNSV
101: LELQIRDLTR IQTLHKRVLE KNNQNTVSQK QKKNDKEVVT TTPVASSVEE QAGQLVATLE SGMTLGSGEY FMDVLVGSPP KHFSLILDTG SDLNWIQCLP
201: CYDCFQQNGA FYDPKASASY KNITCNDQRC NLVSSPDPPM PCKSDNQSCP YYYWYGDSSN TTGDFAVETF TVNLTTNGGS SELYNVENMM FGCGHWNRGL
301: FHGAAGLLGL GRGPLSFSSQ LQSLYGHSFS YCLVDRNSDT NVSSKLIFGE DKDLLSHPNL NFTSFVAGKE NLVDTFYYVQ IKSILVAGEV LNIPEETWNI
401: SSDGAGGTII DSGTTLSYFA EPAYEFIKNK IAEKAKGKYP VYRDFPILDP CFNVSGIHNV QLPELGIAFA DGAVWNFPTE NSFIWLNEDL VCLAMLGTPK
501: SAFSIIGNYQ QQNFHILYDT KRSRLGYAPT KCADI

Arabidopsis Description

AT3g59080/F17J16_130 [Source:UniProtKB/TrEMBL;Acc:Q9LYS8]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.