Factsheet for VIT_12s0028g00610.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 6
plasma membrane 8
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	extracellular
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

extracellular: 26106900

msms PMID: 26106900 doi

C Guillier, M Gamm, G Lucchi, C Truntzer, D Pecqueur, P Ducoroy, M Adrian, MC Héloir

Clinical Innovation Proteomic Platform - CLIPP, 15 Boulevard Maréchal de Lattre de Tassigny, BP37013, F-21070 Dijon cedex, France., CNRS, UMR1347 Agroécologie, ERL CNRS 6300, BP 86510, F-21000 Dijon, France;, Université de Bourgogne, UMR1347 Agroécologie, ERL CNRS 6300, BP 86510, F-21000 Dijon, France;

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG98962	Soybean	vacuole	71.43	69.64
KRH46018	Soybean	vacuole	70.88	69.48
PGSC0003DMT400095799	Potato	vacuole	67.22	68.47
Solyc05g016310.1.1	Tomato	vacuole	65.75	68.25
PGSC0003DMT400091831	Potato	vacuole	67.58	67.46
Solyc07g045100.1.1	Tomato	vacuole	66.85	66.48
KRH73625	Soybean	vacuole	67.95	66.13
AT3G59080.1	Thale cress	vacuole	63.0	64.3
CDX98347	Canola	vacuole	63.37	63.84
CDX67775	Canola	vacuole	63.19	63.07
Bra003363.1-P	Field mustard	vacuole	63.37	63.02
GSMUA_Achr3P03130_001	Banana	vacuole	58.97	61.57
CDY53652	Canola	vacuole	58.42	61.35
CDX79836	Canola	vacuole	58.42	61.11
Bra004734.1-P	Field mustard	vacuole	58.06	60.73
AT2G42980.1	Thale cress	vacuole	56.78	58.82
KRG98063	Soybean	vacuole	57.14	58.21
GSMUA_Achr10P...	Banana	endoplasmic reticulum, vacuole	56.23	56.85
GSMUA_Achr6P13720_001	Banana	vacuole	55.49	56.85
KRH30714	Soybean	vacuole	55.13	55.43
TraesCS7A01G528000.1	Wheat	vacuole	48.53	53.97
TraesCS7D01G516100.1	Wheat	vacuole	48.72	53.96
TraesCS7B01G444800.1	Wheat	vacuole	47.99	53.04
EER97501	Sorghum	vacuole	50.18	53.0
TraesCS7B01G445000.1	Wheat	vacuole	49.08	52.96
TraesCS7A01G528200.1	Wheat	vacuole	49.82	52.92
Os02t0314600-01	Rice	extracellular	49.63	52.72
Zm00001d006330_P001	Maize	vacuole	48.9	52.35
TraesCS7D01G516400.1	Wheat	vacuole	48.72	52.16
EER97174	Sorghum	vacuole	49.82	51.81
Zm00001d022078_P001	Maize	vacuole	48.35	51.56
KRH14503	Soybean	vacuole	68.13	50.89
HORVU7Hr1G116780.2	Barley	plastid	49.45	49.54
HORVU7Hr1G116810.1	Barley	plastid	27.11	41.57
Zm00001d040433_P001	Maize	cytosol	24.54	37.53
VIT_15s0046g00360.t01	Wine grape	extracellular	30.59	34.15
VIT_01s0011g03210.t01	Wine grape	extracellular, vacuole	30.04	33.4
VIT_04s0008g07080.t01	Wine grape	extracellular	26.37	33.33
VIT_00s1206g00010.t01	Wine grape	plastid	19.96	33.33
VIT_17s0000g03990.t01	Wine grape	endoplasmic reticulum, plasma membrane	29.12	32.06
VIT_10s0071g00770.t01	Wine grape	extracellular	27.29	31.11
VIT_04s0008g07110.t01	Wine grape	extracellular	26.56	30.15
VIT_00s0429g00040.t01	Wine grape	extracellular	15.2	28.04
VIT_09s0018g01670.t01	Wine grape	vacuole	23.44	26.89

Protein Annotations

EntrezGene:100243717	wikigene:100243717	MapMan:19.4.3.1	Gene3D:2.40.70.10	MEROPS:A01.A08	InterPro:Aspartic_peptidase_A1
InterPro:Aspartic_peptidase_AS	ProteinID:CCB47458	ProteinID:CCB47458.1	UniProt:F6H5A0	EMBL:FN595235	GO:GO:0003674
GO:GO:0003824	GO:GO:0004190	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233
GO:GO:0009056	GO:GO:0016787	GO:GO:0019538	GO:GO:0030163	InterPro:IPR021109	InterPro:IPR033121
EntrezGene:LOC100243717	wikigene:LOC100243717	InterPro:PEPTIDASE_A1	PFAM:PF14541	PFAM:PF14543	PRINTS:PR00792
ScanProsite:PS00141	PFscan:PS51767	PANTHER:PTHR13683	PANTHER:PTHR13683:SF250	InterPro:Pepsin-like_plant	InterPro:Peptidase_aspartic_dom_sf
SUPFAM:SSF50630	SignalP:SignalP-noTM	InterPro:TAXi_C	InterPro:TAXi_N	UniParc:UPI0002109D94	ArrayExpress:VIT_12s0028g00610
EnsemblPlantsGene:VIT_12s0028g00610	EnsemblPlants:VIT_12s0028g00610.t01	RefSeq:XP_002279141	RefSeq:XP_002279141.2	SEG:seg	:

Description

No Description!

Coordinates

chr12:-:1179524..1181678

Molecular Weight (calculated)

59684.2 Da

IEP (calculated)

5.047

GRAVY (calculated)

-0.295

Length

546 amino acids

Sequence
(BLAST)

001: MVLKVFLLLV LLLVCGAAGT HDHKSKNGSH LAGIEFPEHP SFNAVTASAT TGCSIPNSKK SNPSQDEGFD NCDDDVDDDE AEDGDGDVKQ TVKLNLKRRS
101: AGTEKKESVG VSKMKDLARI QTLYKRMTEK KNQNTVSRLK KQQSKPQVAP PAAAPESSAS VFSGQLIATL ESGVSLGSGE YFIDVFVGTP PKHFSLILDT
201: GSDLNWIQCV PCYECFEQNG PHYDPGQSSS YRNIGCHDSR CHLVSSPDPP QPCKAENQTC PYYYWYGDSS NTTGDFALET FTVNLTMSSG KPELRRVENV
301: MFGCGHWNRG LFHGAAGLLG LGRGPLSFSS QLQSLYGHSF SYCLVDRNSD ANVSSKLIFG EDKDLLSHPE LNFTTLVAGK ENPVDTFYYV QIKSIVVGGE
401: VVNIPEEKWQ IATDGSGGTI IDSGTTLSYF AEPAYQVIKE AFMAKVKGYP VVKDFPVLEP CYNVTGVEQP DLPDFGIVFS DGAVWNFPVE NYFIEIEPRE
501: VVCLAILGTP PSALSIIGNY QQQNFHILYD TKKSRLGFAP TKCADV

Best Arabidopsis Sequence Match ( AT3G59080.1 )
(BLAST)

001: MFSKYSFILC LIFFFVTAFS GDSRALAGNN EQKNISGFSG IDFPNPMRFG SASSSTSNDC GFSSPEKEPT KERTGENKTV KFHLKRRETT TTEKATTNSV
101: LELQIRDLTR IQTLHKRVLE KNNQNTVSQK QKKNDKEVVT TTPVASSVEE QAGQLVATLE SGMTLGSGEY FMDVLVGSPP KHFSLILDTG SDLNWIQCLP
201: CYDCFQQNGA FYDPKASASY KNITCNDQRC NLVSSPDPPM PCKSDNQSCP YYYWYGDSSN TTGDFAVETF TVNLTTNGGS SELYNVENMM FGCGHWNRGL
301: FHGAAGLLGL GRGPLSFSSQ LQSLYGHSFS YCLVDRNSDT NVSSKLIFGE DKDLLSHPNL NFTSFVAGKE NLVDTFYYVQ IKSILVAGEV LNIPEETWNI
401: SSDGAGGTII DSGTTLSYFA EPAYEFIKNK IAEKAKGKYP VYRDFPILDP CFNVSGIHNV QLPELGIAFA DGAVWNFPTE NSFIWLNEDL VCLAMLGTPK
501: SAFSIIGNYQ QQNFHILYDT KRSRLGYAPT KCADI

Arabidopsis Description

AT3g59080/F17J16_130 [Source:UniProtKB/TrEMBL;Acc:Q9LYS8]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.