Factsheet for PGSC0003DMT400059566

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
golgi 5
plasma membrane 6
endoplasmic reticulum 5
vacuole 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	vacuole

cytosol: 22313117
extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g067100.2.1	Tomato	extracellular, plastid	96.49	93.41
VIT_04s0008g07080.t01	Wine grape	extracellular	50.1	56.25
VIT_04s0008g07110.t01	Wine grape	extracellular	54.23	54.68
KRH46241	Soybean	nucleus, vacuole	53.81	53.48
KRG98688	Soybean	nucleus	53.4	52.86
AT5G10770.1	Thale cress	vacuole	50.93	52.11
CDX69804	Canola	vacuole	50.31	51.26
CDX85746	Canola	vacuole	50.31	51.15
CDY40117	Canola	extracellular, vacuole	50.31	51.15
KRH46245	Soybean	nucleus	50.72	51.04
Bra028568.1-P	Field mustard	vacuole	50.1	50.94
KRH46242	Soybean	vacuole	50.93	50.93
GSMUA_Achr1P19480_001	Banana	vacuole	43.92	50.0
CDX97058	Canola	cytosol, extracellular, nucleus	50.31	49.69
KRH46246	Soybean	cytosol	31.75	49.52
AT5G10760.1	Thale cress	vacuole	46.6	48.71
CDX97055	Canola	cytosol, plastid, vacuole	42.06	48.69
CDX97054	Canola	extracellular, plastid, vacuole	46.6	47.78
CDY70207	Canola	plastid, vacuole	46.39	47.67
GSMUA_Achr3P11930_001	Banana	vacuole	42.06	46.68
Bra009007.1-P	Field mustard	plastid, vacuole	41.86	46.67
CDY72573	Canola	plastid, vacuole	41.44	46.21
GSMUA_Achr7P16890_001	Banana	extracellular, vacuole	41.44	45.58
GSMUA_Achr3P04040_001	Banana	mitochondrion	34.64	44.8
TraesCS7B01G392500.1	Wheat	plastid	29.28	44.65
Zm00001d020887_P001	Maize	vacuole	42.68	44.14
Os09t0482200-01	Rice	plasma membrane, vacuole	43.92	43.92
Os09t0482500-01	Rice	extracellular	43.92	43.92
CDX85747	Canola	extracellular, vacuole	43.09	43.72
CDY40116	Canola	extracellular	43.09	43.63
Bra028569.1-P	Field mustard	extracellular	42.89	43.51
KRH73276	Soybean	cytosol	36.29	43.03
EER96952	Sorghum	mitochondrion	42.06	42.41
TraesCS7A01G489100.1	Wheat	cytosol, mitochondrion	32.99	42.33
TraesCS5B01G258200.1	Wheat	plastid, vacuole	42.06	42.32
HORVU5Hr1G072370.1	Barley	mitochondrion, vacuole	42.06	42.15
TraesCS2D01G569500.1	Wheat	plastid	25.98	42.14
GSMUA_Achr3P04020_001	Banana	vacuole	34.02	41.67
TraesCS5A01G259400.2	Wheat	mitochondrion	41.24	41.58
TraesCS5D01G267300.1	Wheat	mitochondrion	41.24	41.32
Zm00001d045852_P001	Maize	plastid	13.2	41.29
GSMUA_Achr3P04060_001	Banana	vacuole	33.4	40.7
KRH73176	Soybean	extracellular, vacuole	38.76	40.69
TraesCS7B01G305000.1	Wheat	plastid	41.44	40.69
EES07336	Sorghum	vacuole	38.97	40.56
Zm00001d045855_P001	Maize	vacuole	30.31	40.5
TraesCS7A01G405600.1	Wheat	mitochondrion, plastid, vacuole	40.82	40.08
EES05617	Sorghum	endoplasmic reticulum, vacuole	38.14	39.7
KRH73277	Soybean	extracellular	37.73	39.7
Zm00001d020886_P001	Maize	endoplasmic reticulum, vacuole	38.97	39.62
TraesCS7A01G489000.1	Wheat	endoplasmic reticulum, extracellular	37.11	39.47
TraesCS7D01G475300.1	Wheat	extracellular, vacuole	37.11	39.47
Os02t0720600-01	Rice	extracellular	37.53	39.31
TraesCS7A01G489400.1	Wheat	endoplasmic reticulum	37.11	39.13
TraesCS7B01G392400.1	Wheat	endoplasmic reticulum, extracellular, vacuole	37.11	39.13
Os06t0610800-01	Rice	nucleus, plastid	41.86	39.11
Zm00001d051693_P001	Maize	endoplasmic reticulum, vacuole	36.91	39.08
TraesCS7A01G222100.1	Wheat	plastid	21.86	38.83
TraesCS7A01G489200.1	Wheat	vacuole	36.7	38.7
Zm00001d037411_P001	Maize	plastid	32.78	38.69
TraesCS6B01G312200.1	Wheat	endoplasmic reticulum, vacuole	36.08	38.63
HORVU7Hr1G045670.1	Barley	vacuole	36.49	38.48
TraesCS6A01G283400.1	Wheat	vacuole	36.08	38.46
Os06t0118000-01	Rice	cytosol, peroxisome	20.41	38.22
TraesCS7D01G047300.1	Wheat	plastid	19.38	38.21
HORVU6Hr1G071190.2	Barley	endoplasmic reticulum, vacuole	35.67	38.11
EES07335	Sorghum	vacuole	36.08	38.04
PGSC0003DMT400036706	Potato	vacuole	37.11	37.97
PGSC0003DMT400074390	Potato	vacuole	36.7	37.95
TraesCS7D01G475500.1	Wheat	endoplasmic reticulum	35.88	37.91
TraesCS7A01G489300.1	Wheat	endoplasmic reticulum	36.08	37.88
TraesCS7D01G399500.1	Wheat	unclear	40.82	37.86
TraesCS5A01G125300.1	Wheat	extracellular	12.78	37.8
TraesCS5D01G133000.1	Wheat	extracellular	12.78	37.8
TraesCS6D01G264000.2	Wheat	unclear	35.26	37.75
TraesCS7B01G129200.1	Wheat	vacuole	36.29	37.69
Os06t0306500-00	Rice	plasma membrane, vacuole	30.72	37.63
EER88640	Sorghum	extracellular, plasma membrane, vacuole	38.97	37.57
TraesCS6A01G283500.1	Wheat	unclear	35.26	37.34
EER88303	Sorghum	vacuole	36.08	37.31
EER96951	Sorghum	endoplasmic reticulum	37.32	37.09
HORVU6Hr1G071160.1	Barley	vacuole	34.85	37.06
TraesCS7B01G392300.1	Wheat	extracellular	24.12	36.79
HORVU7Hr1G094870.4	Barley	plastid	39.79	36.62
TraesCS2A01G589700.1	Wheat	vacuole	34.85	36.5
TraesCS7D01G224300.1	Wheat	vacuole	35.05	36.48
EES06163	Sorghum	vacuole	36.91	36.31
EES07353	Sorghum	extracellular, vacuole	35.46	36.29
TraesCS7A01G185700.1	Wheat	mitochondrion, plastid	32.16	36.19
Zm00001d045831_P001	Maize	plastid	35.88	36.1
HORVU7Hr1G109750.4	Barley	plastid	35.88	36.02
EER89658	Sorghum	vacuole	34.43	35.99
KXG19878	Sorghum	vacuole	33.81	35.96
OQU76292	Sorghum	plasma membrane, plastid, vacuole	36.08	35.93
TraesCS7D01G187300.1	Wheat	vacuole	34.64	35.9
TraesCS7D01G475600.1	Wheat	endoplasmic reticulum, extracellular, vacuole	37.11	35.79
HORVU7Hr1G109730.1	Barley	plasma membrane	36.91	35.66
TraesCS7A01G185800.1	Wheat	endoplasmic reticulum, extracellular, vacuole	34.64	35.59
Zm00001d051692_P001	Maize	endoplasmic reticulum, plasma membrane	34.43	35.53
Zm00001d045863_P001	Maize	vacuole	32.58	35.51
TraesCS7B01G090900.1	Wheat	vacuole	34.85	35.5
Zm00001d045842_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	33.81	35.5
EES03312	Sorghum	extracellular	34.23	35.47
Zm00001d045843_P001	Maize	endoplasmic reticulum, extracellular, vacuole	34.02	35.41
TraesCS7A01G085300.1	Wheat	vacuole	34.02	35.33
TraesCS7D01G187500.1	Wheat	endoplasmic reticulum, vacuole	34.43	35.31
TraesCS7A01G185600.1	Wheat	vacuole	33.81	35.12
OQU76307	Sorghum	endoplasmic reticulum, extracellular, vacuole	33.81	34.97
TraesCS7D01G187400.1	Wheat	extracellular, vacuole	34.23	34.95
TraesCS7B01G090800.1	Wheat	vacuole	34.23	34.87
TraesCS7D01G223500.1	Wheat	plastid	30.93	34.8
Zm00001d037409_P001	Maize	vacuole	33.81	34.45
TraesCS7A01G218800.1	Wheat	plastid	30.72	34.41
EER88307	Sorghum	endoplasmic reticulum, extracellular, vacuole	32.99	34.41
Zm00001d045849_P001	Maize	vacuole	32.99	34.12
Zm00001d051695_P001	Maize	mitochondrion	37.11	33.9
Zm00001d017867_P001	Maize	golgi, vacuole	33.4	33.89
TraesCSU01G254900.2	Wheat	endoplasmic reticulum	26.19	33.51
HORVU0Hr1G016890.2	Barley	plastid	31.75	32.98
TraesCS6D01G403100.1	Wheat	vacuole	31.55	32.83
CDX69805	Canola	cytosol	38.56	32.81
PGSC0003DMT400048585	Potato	vacuole	31.13	32.75
TraesCS6D01G263900.1	Wheat	plasma membrane, vacuole	29.48	32.35
Zm00001d035981_P001	Maize	extracellular	31.96	32.22
PGSC0003DMT400014352	Potato	endoplasmic reticulum, vacuole	32.16	32.1
TraesCS7A01G052600.1	Wheat	endoplasmic reticulum	31.55	32.08
TraesCS7A01G051700.1	Wheat	vacuole	31.13	31.92
EER89096	Sorghum	plasma membrane, vacuole	31.96	31.89
PGSC0003DMT400000651	Potato	vacuole	31.55	31.88
TraesCS7A01G051300.1	Wheat	extracellular, plasma membrane, vacuole	31.13	31.86
TraesCS7D01G223800.1	Wheat	extracellular, vacuole	30.31	31.82
HORVU7Hr1G009410.1	Barley	endoplasmic reticulum, vacuole	32.16	31.58
HORVU7Hr1G009420.4	Barley	endoplasmic reticulum, vacuole	32.16	31.58
TraesCS4A01G439400.1	Wheat	mitochondrion	27.63	31.53
HORVU7Hr1G009380.1	Barley	vacuole	31.96	31.31
TraesCS6B01G312300.1	Wheat	extracellular, vacuole	27.22	31.28
Zm00001d017864_P001	Maize	plastid	33.4	31.27
Os06t0119600-01	Rice	nucleus	31.75	31.11
TraesCSU01G103000.1	Wheat	extracellular, plasma membrane	30.31	31.01
TraesCS7B01G128600.1	Wheat	plastid	29.69	30.97
TraesCS7D01G048200.1	Wheat	endoplasmic reticulum, extracellular, vacuole	31.75	30.8
TraesCS7A01G052800.1	Wheat	endoplasmic reticulum, vacuole	31.34	30.77
PGSC0003DMT400010420	Potato	endoplasmic reticulum, plastid	31.13	30.75
Os06t0121800-00	Rice	endoplasmic reticulum, plasma membrane	30.72	30.47
TraesCS7A01G174100.1	Wheat	extracellular	30.52	30.39
PGSC0003DMT400005606	Potato	nucleus	29.07	30.26
PGSC0003DMT400033734	Potato	vacuole	29.9	30.08
OQU84087	Sorghum	endoplasmic reticulum, vacuole	31.55	30.06
TraesCS7B01G079000.1	Wheat	extracellular, plasma membrane, vacuole	30.1	29.86
TraesCS7D01G048000.1	Wheat	endoplasmic reticulum, extracellular, vacuole	31.13	29.67
Os06t0121500-01	Rice	endoplasmic reticulum, extracellular	27.01	29.64
HORVU7Hr1G036020.1	Barley	extracellular, plasma membrane, vacuole	29.9	29.53
TraesCS7D01G175100.2	Wheat	extracellular, plasma membrane, vacuole	29.9	29.53
PGSC0003DMT400065088	Potato	extracellular	29.07	29.44
Os06t0118700-02	Rice	extracellular	29.28	28.74
KXG19867	Sorghum	golgi	33.2	28.65
TraesCS6D01G263700.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	33.81	27.75
HORVU7Hr1G009260.2	Barley	endoplasmic reticulum	27.22	27.62
PGSC0003DMT400091831	Potato	vacuole	30.31	26.87
EER89099	Sorghum	plastid	28.45	26.44
PGSC0003DMT400095799	Potato	vacuole	29.07	26.31
Bra009006.1-P	Field mustard	plasma membrane, plastid, vacuole	50.52	23.93
Zm00001d036827_P002	Maize	plasma membrane, vacuole	40.41	18.92
GSMUA_Achr3P04070_001	Banana	nucleus	41.65	16.5

Protein Annotations

EntrezGene:102595513	MapMan:19.4.3.1	Gene3D:2.40.70.10	MEROPS:A01.050	InterPro:Aspartic_peptidase_A1	InterPro:CND41-like
GO:GO:0003674	GO:GO:0003824	GO:GO:0004190	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152
GO:GO:0008233	GO:GO:0016787	GO:GO:0019538	InterPro:IPR021109	InterPro:IPR033121	UniProt:M1C4F2
InterPro:PEPTIDASE_A1	PFAM:PF14541	PFAM:PF14543	EnsemblPlantsGene:PGSC0003DMG400023144	PGSC:PGSC0003DMG400023144	EnsemblPlants:PGSC0003DMT400059566
PFscan:PS51767	PANTHER:PTHR13683	PANTHER:PTHR13683:SF393	InterPro:Peptidase_aspartic_dom_sf	SUPFAM:SSF50630	SignalP:SignalP-noTM
InterPro:TAXi_C	InterPro:TAXi_N	UniParc:UPI00029517BB	RefSeq:XP_006364268.1	SEG:seg	:

Description

41 kD chloroplast nucleoid DNA binding protein (CND41) [Source:PGSC_GENE;Acc:PGSC0003DMG400023144]

Coordinates

chr8:-:40142198..40145798

Molecular Weight (calculated)

52050.9 Da

IEP (calculated)

9.114

GRAVY (calculated)

-0.144

Length

485 amino acids

Sequence
(BLAST)

001: MATRSVLLSS SFLLILLSFS LEKSNALEGR KTIESNFHTI QLTSILPSSS CKPSSKGKRG GTSLEVINKH GPCSQLNKKG EKGQTLTEIL AHDQARVDSI
101: QTRIAAQNFN LFRKTEKTSK KYRAKDSKTT LPAQPGTALS TGNYIVTIGI GTPKKDLTLI FDTGSDLTWT QCEPCFKTCF PQQQPIFNPS SSSTYSNISC
201: SSTACSGLKS ATGNTPLCSS STCVYGIQYG DSSFSIGFFA KDKLTLSATD VFDGFMFGCG QDNKGLFGKT AGLIGLGRDP LSIVSQTSAK FGKYFSYCLP
301: TRRGSNGHLT FGKNGAKSNL QFTPFASSQG TSFYFIDVLG ISVGGKALAI SPMVFKNAGT IIDSGTVITR LPSTAYANMR ATFREFMSKY PRAPDLSLLD
401: TCYDLSNYTT VSIPKISFNF NGNTKMDLVP NGIFFVNGAS QVCLAFASNG DDDSIGIFGN TQQQTMEIVY DVAGEKLGFG YGGCT

Best Arabidopsis Sequence Match ( AT5G10770.1 )
(BLAST)

001: MSINRNLLNI IIILCICLNL GCNDGAQERE TDSHTIQVSS LLPSSSSSCV LSPRASTTKS SLHVTHRHGT CSRLNNGKAT SPDHVEILRL DQARVNSIHS
101: KLSKKLATDH VSESKSTDLP AKDGSTLGSG NYIVTVGLGT PKNDLSLIFD TGSDLTWTQC QPCVRTCYDQ KEPIFNPSKS TSYYNVSCSS AACGSLSSAT
201: GNAGSCSASN CIYGIQYGDQ SFSVGFLAKE KFTLTNSDVF DGVYFGCGEN NQGLFTGVAG LLGLGRDKLS FPSQTATAYN KIFSYCLPSS ASYTGHLTFG
301: SAGISRSVKF TPISTITDGT SFYGLNIVAI TVGGQKLPIP STVFSTPGAL IDSGTVITRL PPKAYAALRS SFKAKMSKYP TTSGVSILDT CFDLSGFKTV
401: TIPKVAFSFS GGAVVELGSK GIFYVFKISQ VCLAFAGNSD DSNAAIFGNV QQQTLEVVYD GAGGRVGFAP NGCS

Arabidopsis Description

Aspartyl protease family protein At5g10770 [Source:UniProtKB/Swiss-Prot;Acc:Q8S9J6]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.