Factsheet for PGSC0003DMT400057614

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 4
plasma membrane 5
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	extracellular, plasma membrane, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g078850.1.1	Tomato	extracellular, nucleus	72.08	76.55
GSMUA_Achr6P30210_001	Banana	cytosol, extracellular, plastid	30.52	58.75
PGSC0003DMT400028050	Potato	extracellular	47.4	58.4
AT4G21620.1	Thale cress	extracellular	47.4	55.73
VIT_13s0073g00040.t01	Wine grape	cytosol, extracellular, plastid	27.27	51.85
CDX76436	Canola	extracellular	43.51	51.15
Bra020903.1-P	Field mustard	extracellular	43.51	51.15
Bra038769.1-P	Field mustard	extracellular	44.16	51.13
CDX94042	Canola	extracellular	43.51	50.38
CDX98689	Canola	extracellular	43.51	50.38
GSMUA_Achr9P26340_001	Banana	extracellular	42.21	46.76
KRH10772	Soybean	extracellular	44.16	46.58
VIT_00s0301g00040.t01	Wine grape	extracellular	46.75	46.45
GSMUA_Achr4P32330_001	Banana	extracellular	42.86	45.52
CDY31419	Canola	extracellular	23.38	45.0
GSMUA_Achr7P00710_001	Banana	extracellular	40.91	44.37
Bra027092.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	44.16	43.87
CDY12893	Canola	endoplasmic reticulum, extracellular, vacuole	44.16	43.87
CDY40955	Canola	extracellular	42.86	42.58
KRH21551	Soybean	cytosol, extracellular, mitochondrion, vacuole	46.1	42.26
GSMUA_Achr5P01900_001	Banana	extracellular	37.66	42.03
TraesCS4D01G020900.1	Wheat	extracellular	42.21	40.62
TraesCS4A01G290900.1	Wheat	extracellular	42.86	40.49
AT1G61255.1	Thale cress	extracellular	35.71	38.46
Os03t0676300-01	Rice	extracellular	40.91	38.41
Zm00001d013551_P001	Maize	endoplasmic reticulum, plasma membrane	40.26	37.58
EER93676	Sorghum	endoplasmic reticulum, extracellular, plasma membrane	39.61	33.52
Zm00001d031191_P001	Maize	extracellular	32.47	32.05
KXG24122	Sorghum	plastid	37.01	28.36

Protein Annotations

EnsemblPlants:PGSC0003DMT400057614	EnsemblPlantsGene:PGSC0003DMG400022371	EntrezGene:102581407	PANTHER:PTHR34789	PANTHER:PTHR34789:SF1	PGSC:PGSC0003DMG400022371
RefSeq:XP_006347095.1	SEG:seg	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI000295E763	UniProt:M1C1D5
MapMan:35.2	:	:	:	:	:

Description

Nucleic acid binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400022371]

Coordinates

chr2:-:34515823..34516551

Molecular Weight (calculated)

15550.0 Da

IEP (calculated)

10.070

GRAVY (calculated)

-0.094

Length

154 amino acids

Sequence
(BLAST)

001: MKKISITTLT LLALLLIITF TSTIATRHIH PKKHGVEKTK KGETGSGEVR NNNGKNNGDG AFGGIFGPGG GFNIPGLGGG VFGGGFGSPN GGYGKSGVVS
101: SSVVCKEKGP CLGMKLICPA KCYKAYSSAG KGYGFGGGSG GCTMDCKKKC LAYC

Best Arabidopsis Sequence Match ( AT4G21620.1 )
(BLAST)

001: MFTKSILLAS LLIIILVSAT ESARQKSGND GLGFGGVPGS GFIPGFGNGF PGTGVGGGYG GGFGGPSGGF GKGGVVRPTV TCKEKGPCNG KKLRCPAKCF
101: KSFSRSGKGY GGGGGGGGCT MDCKKKCIAY C

Arabidopsis Description

AT4g21620/F17L22_80 [Source:UniProtKB/TrEMBL;Acc:Q9SVT5]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.