CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, extracellular, vacuole, cytosol

Predictor Summary:

nucleus 2
mitochondrion 4
extracellular 1
plastid 1
cytosol 1
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH10772	Soybean	extracellular	72.02	82.88
GSMUA_Achr6P30210_001	Banana	cytosol, extracellular, plastid	32.14	67.5
VIT_13s0073g00040.t01	Wine grape	cytosol, extracellular, plastid	30.36	62.96
Bra020903.1-P	Field mustard	extracellular	48.81	62.6
CDX76436	Canola	extracellular	48.81	62.6
AT4G21620.1	Thale cress	extracellular	48.21	61.83
Bra038769.1-P	Field mustard	extracellular	48.21	60.9
CDX98689	Canola	extracellular	47.62	60.15
CDX94042	Canola	extracellular	47.02	59.4
Solyc10g009190.1.1	Tomato	nucleus	44.05	59.2
VIT_00s0301g00040.t01	Wine grape	extracellular	54.17	58.71
PGSC0003DMT400028050	Potato	extracellular	42.26	56.8
CDY40955	Canola	extracellular	51.79	56.13
Bra027092.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	51.19	55.48
CDY12893	Canola	endoplasmic reticulum, extracellular, vacuole	51.19	55.48
GSMUA_Achr7P00710_001	Banana	extracellular	45.83	54.23
GSMUA_Achr4P32330_001	Banana	extracellular	46.43	53.79
CDY31419	Canola	extracellular	25.6	53.75
GSMUA_Achr5P01900_001	Banana	extracellular	42.26	51.45
GSMUA_Achr9P26340_001	Banana	extracellular	42.26	51.08
Solyc02g078850.1.1	Tomato	extracellular, nucleus	44.05	51.03
AT1G61255.1	Thale cress	extracellular	40.48	47.55
Os03t0676300-01	Rice	extracellular	45.24	46.34
PGSC0003DMT400057614	Potato	extracellular	42.26	46.1
TraesCS4A01G290900.1	Wheat	extracellular	43.45	44.79
TraesCS4D01G020900.1	Wheat	extracellular	41.67	43.75
Zm00001d013551_P001	Maize	endoplasmic reticulum, plasma membrane	41.07	41.82
EER93676	Sorghum	endoplasmic reticulum, extracellular, plasma membrane	41.67	38.46
KXG24122	Sorghum	plastid	44.05	36.82
Zm00001d031191_P001	Maize	extracellular	33.33	35.9

Protein Annotations

EMBL:ACUP02008359	EMBL:BT089305	EnsemblPlants:KRH21551	EnsemblPlantsGene:GLYMA_13G244800	EntrezGene:100499725	PANTHER:PTHR34789
PANTHER:PTHR34789:SF1	ProteinID:KRH21551	ProteinID:KRH21551.1	SEG:seg	SignalP:SignalP-noTM	UniParc:UPI0001B1590F
UniProt:C6SVW2	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:35408963..35410102

Molecular Weight (calculated)

16953.7 Da

IEP (calculated)

10.456

GRAVY (calculated)

-0.202

Length

168 amino acids

Sequence
(BLAST)

001: MLQTPLLQHK NPKFVLQHKK MKPTITILLL SLLLLITSPS LATRPASNPD QVKHNKNNNQ GGGAGAGAGG FFGPGGGFSI PGFGNGFGNG IIGGGYGSGY
101: GGPNGGSSKG GIIRPTVVCK DKGPCFQKKV TCPAKCFSSF SRSGKGYGGG GGGGGCTIDC KKKCIAYC

Best Arabidopsis Sequence Match ( AT4G21620.1 )
(BLAST)

001: MFTKSILLAS LLIIILVSAT ESARQKSGND GLGFGGVPGS GFIPGFGNGF PGTGVGGGYG GGFGGPSGGF GKGGVVRPTV TCKEKGPCNG KKLRCPAKCF
101: KSFSRSGKGY GGGGGGGGCT MDCKKKCIAY C

Arabidopsis Description

AT4g21620/F17L22_80 [Source:UniProtKB/TrEMBL;Acc:Q9SVT5]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.