Subcellular Localization
min:
: max
Winner_takes_all: extracellular, nucleus
Predictor Summary:
Predictor Summary:
- extracellular 9
- golgi 5
- plasma membrane 5
- endoplasmic reticulum 5
- vacuole 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400057614 | Potato | extracellular | 76.55 | 72.08 |
| Solyc10g009190.1.1 | Tomato | nucleus | 55.86 | 64.8 |
| GSMUA_Achr6P30210_001 | Banana | cytosol, extracellular, plastid | 33.79 | 61.25 |
| AT4G21620.1 | Thale cress | extracellular | 52.41 | 58.02 |
| CDX76436 | Canola | extracellular | 49.66 | 54.96 |
| Bra020903.1-P | Field mustard | extracellular | 49.66 | 54.96 |
| Bra038769.1-P | Field mustard | extracellular | 49.66 | 54.14 |
| CDX94042 | Canola | extracellular | 48.97 | 53.38 |
| CDX98689 | Canola | extracellular | 48.97 | 53.38 |
| VIT_13s0073g00040.t01 | Wine grape | cytosol, extracellular, plastid | 29.66 | 53.09 |
| VIT_00s0301g00040.t01 | Wine grape | extracellular | 53.1 | 49.68 |
| GSMUA_Achr9P26340_001 | Banana | extracellular | 47.59 | 49.64 |
| KRH10772 | Soybean | extracellular | 49.66 | 49.32 |
| GSMUA_Achr4P32330_001 | Banana | extracellular | 48.28 | 48.28 |
| GSMUA_Achr7P00710_001 | Banana | extracellular | 46.9 | 47.89 |
| CDY31419 | Canola | extracellular | 25.52 | 46.25 |
| KRH21551 | Soybean | cytosol, extracellular, mitochondrion, vacuole | 51.03 | 44.05 |
| GSMUA_Achr5P01900_001 | Banana | extracellular | 40.69 | 42.75 |
| Bra027092.1-P | Field mustard | endoplasmic reticulum, extracellular, vacuole | 45.52 | 42.58 |
| CDY12893 | Canola | endoplasmic reticulum, extracellular, vacuole | 45.52 | 42.58 |
| TraesCS4D01G020900.1 | Wheat | extracellular | 46.9 | 42.5 |
| TraesCS4A01G290900.1 | Wheat | extracellular | 46.9 | 41.72 |
| CDY40955 | Canola | extracellular | 44.14 | 41.29 |
| Os03t0676300-01 | Rice | extracellular | 44.83 | 39.63 |
| AT1G61255.1 | Thale cress | extracellular | 37.93 | 38.46 |
| Zm00001d013551_P001 | Maize | endoplasmic reticulum, plasma membrane | 42.07 | 36.97 |
| EER93676 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 43.45 | 34.62 |
| Zm00001d031191_P001 | Maize | extracellular | 36.55 | 33.97 |
| KXG24122 | Sorghum | plastid | 41.38 | 29.85 |
Protein Annotations
| EnsemblPlants:Solyc02g078850.1.1 | EnsemblPlantsGene:Solyc02g078850.1 | PANTHER:PTHR34789 | PANTHER:PTHR34789:SF1 | SEG:seg | SignalP:SignalP-noTM |
| TMHMM:TMhelix | UniParc:UPI00027684A7 | UniProt:K4B9A9 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr2:-:43496371..43496808
Molecular Weight (calculated)
14603.1 Da
IEP (calculated)
10.393
GRAVY (calculated)
0.020
Length
145 amino acids
Sequence
(BLAST)
(BLAST)
001: MKKISITLLA LLLIITFNST IATRHIHPNK HGVGKTKKGS GEVRNNNGGD VGFGGIFGPG GGFNIPGLGG GVFGGGFGGP KGGYGKGGVI RSSVVCKVKG
101: PCFGMKLICP AKCYKSYSSA GKGYGFGGGS GGCTMDCKKK CLAYC
101: PCFGMKLICP AKCYKSYSSA GKGYGFGGGS GGCTMDCKKK CLAYC
001: MFTKSILLAS LLIIILVSAT ESARQKSGND GLGFGGVPGS GFIPGFGNGF PGTGVGGGYG GGFGGPSGGF GKGGVVRPTV TCKEKGPCNG KKLRCPAKCF
101: KSFSRSGKGY GGGGGGGGCT MDCKKKCIAY C
101: KSFSRSGKGY GGGGGGGGCT MDCKKKCIAY C
Arabidopsis Description
AT4g21620/F17L22_80 [Source:UniProtKB/TrEMBL;Acc:Q9SVT5]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.