Factsheet for GSMUA_Achr4P32330_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
golgi 5
plasma membrane 5
endoplasmic reticulum 5
vacuole 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P30210_001	Banana	cytosol, extracellular, plastid	42.76	77.5
GSMUA_Achr7P00710_001	Banana	extracellular	67.59	69.01
GSMUA_Achr5P01900_001	Banana	extracellular	61.38	64.49
VIT_13s0073g00040.t01	Wine grape	cytosol, extracellular, plastid	33.79	60.49
GSMUA_Achr9P26340_001	Banana	extracellular	57.93	60.43
Bra020903.1-P	Field mustard	extracellular	49.66	54.96
CDX76436	Canola	extracellular	49.66	54.96
Bra038769.1-P	Field mustard	extracellular	50.34	54.89
CDX98689	Canola	extracellular	50.34	54.89
AT4G21620.1	Thale cress	extracellular	48.97	54.2
CDX94042	Canola	extracellular	49.66	54.14
CDY40955	Canola	extracellular	57.24	53.55
VIT_00s0301g00040.t01	Wine grape	extracellular	57.24	53.55
CDY12893	Canola	endoplasmic reticulum, extracellular, vacuole	55.86	52.26
Bra027092.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	55.86	52.26
TraesCS4D01G020900.1	Wheat	extracellular	54.48	49.38
KRH10772	Soybean	extracellular	49.66	49.32
Solyc10g009190.1.1	Tomato	nucleus	42.07	48.8
Os03t0676300-01	Rice	extracellular	55.17	48.78
Solyc02g078850.1.1	Tomato	extracellular, nucleus	48.28	48.28
PGSC0003DMT400028050	Potato	extracellular	41.38	48.0
KRH21551	Soybean	cytosol, extracellular, mitochondrion, vacuole	53.79	46.43
AT1G61255.1	Thale cress	extracellular	45.52	46.15
CDY31419	Canola	extracellular	24.14	43.75
TraesCS4A01G290900.1	Wheat	extracellular	48.97	43.56
PGSC0003DMT400057614	Potato	extracellular	45.52	42.86
Zm00001d013551_P001	Maize	endoplasmic reticulum, plasma membrane	48.28	42.42
EER93676	Sorghum	endoplasmic reticulum, extracellular, plasma membrane	50.34	40.11
Zm00001d031191_P001	Maize	extracellular	42.07	39.1
KXG24122	Sorghum	plastid	51.72	37.31

Protein Annotations

EnsemblPlants:GSMUA_Achr4P32330_001	EnsemblPlants:GSMUA_Achr4T32330_001	EnsemblPlantsGene:GSMUA_Achr4G32330_001	PANTHER:PTHR34789	PANTHER:PTHR34789:SF1	SEG:seg
SignalP:SignalP-noTM	UniParc:UPI0002968335	UniProt:M0STZ5	MapMan:35.2	:	:

Description

Putative nucleic acid binding protein (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr4G32330_001]

Coordinates

chr4:+:29146364..29146801

Molecular Weight (calculated)

14200.9 Da

IEP (calculated)

9.328

GRAVY (calculated)

-0.142

Length

145 amino acids

Sequence
(BLAST)

001: MERTGHVLVF LLLLAAASTS TAARDLEAEL AKGKGKGQGG GGGGSGIPGF GADPGGYFGP GSGFNMPGFG GGWGAGYGGP TGGYSRGGVV RPSVVCSEKG
101: PCYKKRLTCP AKCFSSFSHS GKGYGAGGGG GGCTIDCKKR CVAYC

Best Arabidopsis Sequence Match ( AT4G21620.1 )
(BLAST)

001: MFTKSILLAS LLIIILVSAT ESARQKSGND GLGFGGVPGS GFIPGFGNGF PGTGVGGGYG GGFGGPSGGF GKGGVVRPTV TCKEKGPCNG KKLRCPAKCF
101: KSFSRSGKGY GGGGGGGGCT MDCKKKCIAY C

Arabidopsis Description

AT4g21620/F17L22_80 [Source:UniProtKB/TrEMBL;Acc:Q9SVT5]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.