Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 8
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 6
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g009190.1.1 | Tomato | nucleus | 82.4 | 82.4 |
| VIT_13s0073g00040.t01 | Wine grape | cytosol, extracellular, plastid | 37.6 | 58.02 |
| GSMUA_Achr6P30210_001 | Banana | cytosol, extracellular, plastid | 36.8 | 57.5 |
| AT4G21620.1 | Thale cress | extracellular | 58.4 | 55.73 |
| CDX76436 | Canola | extracellular | 54.4 | 51.91 |
| Bra020903.1-P | Field mustard | extracellular | 54.4 | 51.91 |
| CDX98689 | Canola | extracellular | 54.4 | 51.13 |
| Bra038769.1-P | Field mustard | extracellular | 54.4 | 51.13 |
| CDX94042 | Canola | extracellular | 52.8 | 49.62 |
| VIT_00s0301g00040.t01 | Wine grape | extracellular | 59.2 | 47.74 |
| PGSC0003DMT400057614 | Potato | extracellular | 58.4 | 47.4 |
| KRH10772 | Soybean | extracellular | 55.2 | 47.26 |
| GSMUA_Achr7P00710_001 | Banana | extracellular | 49.6 | 43.66 |
| CDY31419 | Canola | extracellular | 27.2 | 42.5 |
| GSMUA_Achr9P26340_001 | Banana | extracellular | 47.2 | 42.45 |
| KRH21551 | Soybean | cytosol, extracellular, mitochondrion, vacuole | 56.8 | 42.26 |
| Bra027092.1-P | Field mustard | endoplasmic reticulum, extracellular, vacuole | 52.0 | 41.94 |
| CDY12893 | Canola | endoplasmic reticulum, extracellular, vacuole | 52.0 | 41.94 |
| GSMUA_Achr4P32330_001 | Banana | extracellular | 48.0 | 41.38 |
| CDY40955 | Canola | extracellular | 51.2 | 41.29 |
| TraesCS4A01G290900.1 | Wheat | extracellular | 52.8 | 40.49 |
| TraesCS4D01G020900.1 | Wheat | extracellular | 51.2 | 40.0 |
| Os03t0676300-01 | Rice | extracellular | 50.4 | 38.41 |
| GSMUA_Achr5P01900_001 | Banana | extracellular | 42.4 | 38.41 |
| Zm00001d013551_P001 | Maize | endoplasmic reticulum, plasma membrane | 47.2 | 35.76 |
| AT1G61255.1 | Thale cress | extracellular | 39.2 | 34.27 |
| EER93676 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 48.0 | 32.97 |
| Zm00001d031191_P001 | Maize | extracellular | 40.8 | 32.69 |
| KXG24122 | Sorghum | plastid | 46.4 | 28.86 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400028050 | EnsemblPlantsGene:PGSC0003DMG400010821 | EntrezGene:102605916 | PANTHER:PTHR34789 | PANTHER:PTHR34789:SF1 | PGSC:PGSC0003DMG400010821 |
| RefSeq:XP_006361015.1 | SEG:seg | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI000294DAE4 | UniProt:M1AQL8 |
| MapMan:35.2 | : | : | : | : | : |
Description
Nucleic acid binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400010821]
Coordinates
chr10:-:4815791..4816509
Molecular Weight (calculated)
12598.3 Da
IEP (calculated)
9.345
GRAVY (calculated)
-0.049
Length
125 amino acids
Sequence
(BLAST)
(BLAST)
001: MNNSIALILT FLFITITITF ATTQNDDNNN IPGFGPGGGF NIPGFGPVVG GGYGGGFGSP KGGYGKGGTI RPTIVCKDKG PCFGKKLKCP SKCFKSSSGA
101: GKGYGYGGGG GGCIMDCKNK CLAYC
101: GKGYGYGGGG GGCIMDCKNK CLAYC
001: MFTKSILLAS LLIIILVSAT ESARQKSGND GLGFGGVPGS GFIPGFGNGF PGTGVGGGYG GGFGGPSGGF GKGGVVRPTV TCKEKGPCNG KKLRCPAKCF
101: KSFSRSGKGY GGGGGGGGCT MDCKKKCIAY C
101: KSFSRSGKGY GGGGGGGGCT MDCKKKCIAY C
Arabidopsis Description
AT4g21620/F17L22_80 [Source:UniProtKB/TrEMBL;Acc:Q9SVT5]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.