Factsheet for Os03t0676300-01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
golgi 5
plasma membrane 6
endoplasmic reticulum 5
vacuole 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

extracellular: 19038476
extracellular: 19226311

msms PMID: 19226311 doi

WK Cho, XY Chen, H Chu, Y Rim, S Kim, ST Kim, SW Kim, ZY Park, JY Kim

Division of Applied Life Science (BK21 Program), Graduate School, Environmental Biotechnology National Core Research Center, PMBBRC, Gyeongsang National University, Jinju, Korea.

msms PMID: 19038476 doi

XY Chen, ST Kim, WK Cho, Y Rim, S Kim, SW Kim, KY Kang, ZY Park, JY Kim

Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju 660-701, Republic of Korea.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P30210_001	Banana	cytosol, extracellular, plastid	34.76	71.25
TraesCS4D01G020900.1	Wheat	extracellular	60.98	62.5
EER93676	Sorghum	endoplasmic reticulum, extracellular, plasma membrane	67.68	60.99
Bra020903.1-P	Field mustard	extracellular	47.56	59.54
CDX76436	Canola	extracellular	47.56	59.54
Bra038769.1-P	Field mustard	extracellular	48.17	59.4
CDX98689	Canola	extracellular	48.17	59.4
CDX94042	Canola	extracellular	47.56	58.65
AT4G21620.1	Thale cress	extracellular	46.34	58.02
Zm00001d013551_P001	Maize	endoplasmic reticulum, plasma membrane	57.93	57.58
VIT_13s0073g00040.t01	Wine grape	cytosol, extracellular, plastid	28.05	56.79
TraesCS4A01G290900.1	Wheat	extracellular	56.1	56.44
GSMUA_Achr4P32330_001	Banana	extracellular	48.78	55.17
GSMUA_Achr7P00710_001	Banana	extracellular	47.56	54.93
CDY31419	Canola	extracellular	25.61	52.5
Solyc10g009190.1.1	Tomato	nucleus	38.41	50.4
PGSC0003DMT400028050	Potato	extracellular	38.41	50.4
VIT_00s0301g00040.t01	Wine grape	extracellular	45.73	48.39
GSMUA_Achr9P26340_001	Banana	extracellular	40.85	48.2
CDY40955	Canola	extracellular	44.51	47.1
KRH10772	Soybean	extracellular	41.46	46.58
Bra027092.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	43.9	46.45
CDY12893	Canola	endoplasmic reticulum, extracellular, vacuole	43.9	46.45
GSMUA_Achr5P01900_001	Banana	extracellular	39.02	46.38
KRH21551	Soybean	cytosol, extracellular, mitochondrion, vacuole	46.34	45.24
Solyc02g078850.1.1	Tomato	extracellular, nucleus	39.63	44.83
AT1G61255.1	Thale cress	extracellular	39.02	44.76
PGSC0003DMT400057614	Potato	extracellular	38.41	40.91

Protein Annotations

EMBL:AK108103	EnsemblPlants:Os03t0676300-01	EnsemblPlantsGene:Os03g0676300	EntrezGene:4333711	PANTHER:PTHR34789	PANTHER:PTHR34789:SF1
ProteinID:AAG46079.1	ProteinID:ABF98166.1	ProteinID:BAF12803.1	ProteinID:BAS85724.1	RefSeq:XP_015629189.1	SEG:seg
SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI00000A97C6	UniProt:Q9FRF5	MapMan:35.2	:

Description

Similar to cold shock protein-1. (Os03t0676300-01)

Coordinates

chr3:+:26746815..26747658

Molecular Weight (calculated)

15766.1 Da

IEP (calculated)

9.955

GRAVY (calculated)

-0.041

Length

164 amino acids

Sequence
(BLAST)

001: MASTARVAAA LFLLLLGLSA TAPLAARDLM SAAPSAKKQP AGRKPSVQPG YPGTNPGGGG GGGIPTIPGF GSIPGMGGGM GGFNVPGMGG GWGGGYGTPS
101: GGYSRGGVVV PTVVCSDKGP CYRKKVTCPK KCFSSYSSSG KGYGGGGGGG GCTIDCKTKC TAYC

Best Arabidopsis Sequence Match ( AT4G21620.1 )
(BLAST)

001: MFTKSILLAS LLIIILVSAT ESARQKSGND GLGFGGVPGS GFIPGFGNGF PGTGVGGGYG GGFGGPSGGF GKGGVVRPTV TCKEKGPCNG KKLRCPAKCF
101: KSFSRSGKGY GGGGGGGGCT MDCKKKCIAY C

Arabidopsis Description

AT4g21620/F17L22_80 [Source:UniProtKB/TrEMBL;Acc:Q9SVT5]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.