Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 8
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 5
- golgi 5
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400028050 | Potato | extracellular | 82.4 | 82.4 |
| GSMUA_Achr6P30210_001 | Banana | cytosol, extracellular, plastid | 38.4 | 60.0 |
| AT4G21620.1 | Thale cress | extracellular | 60.0 | 57.25 |
| VIT_13s0073g00040.t01 | Wine grape | cytosol, extracellular, plastid | 36.8 | 56.79 |
| Solyc02g078850.1.1 | Tomato | extracellular, nucleus | 64.8 | 55.86 |
| CDX76436 | Canola | extracellular | 56.0 | 53.44 |
| Bra020903.1-P | Field mustard | extracellular | 56.0 | 53.44 |
| Bra038769.1-P | Field mustard | extracellular | 56.8 | 53.38 |
| CDX98689 | Canola | extracellular | 56.0 | 52.63 |
| CDX94042 | Canola | extracellular | 55.2 | 51.88 |
| KRH10772 | Soybean | extracellular | 59.2 | 50.68 |
| VIT_00s0301g00040.t01 | Wine grape | extracellular | 60.0 | 48.39 |
| GSMUA_Achr7P00710_001 | Banana | extracellular | 51.2 | 45.07 |
| KRH21551 | Soybean | cytosol, extracellular, mitochondrion, vacuole | 59.2 | 44.05 |
| GSMUA_Achr9P26340_001 | Banana | extracellular | 48.8 | 43.88 |
| CDY31419 | Canola | extracellular | 28.0 | 43.75 |
| Bra027092.1-P | Field mustard | endoplasmic reticulum, extracellular, vacuole | 53.6 | 43.23 |
| CDY40955 | Canola | extracellular | 53.6 | 43.23 |
| CDY12893 | Canola | endoplasmic reticulum, extracellular, vacuole | 53.6 | 43.23 |
| GSMUA_Achr4P32330_001 | Banana | extracellular | 48.8 | 42.07 |
| TraesCS4D01G020900.1 | Wheat | extracellular | 52.0 | 40.62 |
| GSMUA_Achr5P01900_001 | Banana | extracellular | 44.8 | 40.58 |
| TraesCS4A01G290900.1 | Wheat | extracellular | 52.0 | 39.88 |
| Os03t0676300-01 | Rice | extracellular | 50.4 | 38.41 |
| Zm00001d013551_P001 | Maize | endoplasmic reticulum, plasma membrane | 48.8 | 36.97 |
| AT1G61255.1 | Thale cress | extracellular | 40.8 | 35.66 |
| Zm00001d031191_P001 | Maize | extracellular | 43.2 | 34.62 |
| EER93676 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 48.8 | 33.52 |
| KXG24122 | Sorghum | plastid | 46.4 | 28.86 |
Protein Annotations
| EnsemblPlants:Solyc10g009190.1.1 | EnsemblPlantsGene:Solyc10g009190.1 | PANTHER:PTHR34789 | PANTHER:PTHR34789:SF1 | SEG:seg | SignalP:SignalP-noTM |
| TMHMM:TMhelix | UniParc:UPI000276BD97 | UniProt:K4CY95 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr10:-:3186982..3187359
Molecular Weight (calculated)
12696.7 Da
IEP (calculated)
9.862
GRAVY (calculated)
0.053
Length
125 amino acids
Sequence
(BLAST)
(BLAST)
001: MKNSIALILI FLFISITFTF ATTKNDDNNN IPGFGPVGGF NIPGFGPIVG GGYGGGFGGP KGGYGKGGII RPTIVCKDKG PCFGKKLKCP SKCFKSSSGA
101: GKGYGYGGGG GGCIMDCKKK CLAYC
101: GKGYGYGGGG GGCIMDCKKK CLAYC
1: MFTKSILLAS LLIIILVSAT ESARQKSGND GLGFGGFGKG GVVRPTVTCK EKGPCNGKKL RCPAKCFKSF SRSGKGYGGG GGGGGCTMDC KKKCIAYC
Arabidopsis Description
AT4g21620/F17L22_80 [Source:UniProtKB/TrEMBL;Acc:Q9SVT5]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.