Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- golgi 4
- plasma membrane 4
- endoplasmic reticulum 4
- vacuole 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G020900.1 | Wheat | extracellular | 77.3 | 78.75 |
| GSMUA_Achr6P30210_001 | Banana | cytosol, extracellular, plastid | 33.74 | 68.75 |
| Os03t0676300-01 | Rice | extracellular | 56.44 | 56.1 |
| Zm00001d013551_P001 | Maize | endoplasmic reticulum, plasma membrane | 55.21 | 54.55 |
| VIT_13s0073g00040.t01 | Wine grape | cytosol, extracellular, plastid | 26.99 | 54.32 |
| PGSC0003DMT400028050 | Potato | extracellular | 40.49 | 52.8 |
| Solyc10g009190.1.1 | Tomato | nucleus | 39.88 | 52.0 |
| CDX76436 | Canola | extracellular | 41.72 | 51.91 |
| AT4G21620.1 | Thale cress | extracellular | 41.72 | 51.91 |
| Bra020903.1-P | Field mustard | extracellular | 41.72 | 51.91 |
| CDX98689 | Canola | extracellular | 42.33 | 51.88 |
| Bra038769.1-P | Field mustard | extracellular | 42.33 | 51.88 |
| EER93676 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 57.67 | 51.65 |
| CDX94042 | Canola | extracellular | 41.72 | 51.13 |
| VIT_00s0301g00040.t01 | Wine grape | extracellular | 48.47 | 50.97 |
| GSMUA_Achr9P26340_001 | Banana | extracellular | 42.94 | 50.36 |
| GSMUA_Achr4P32330_001 | Banana | extracellular | 43.56 | 48.97 |
| KRH10772 | Soybean | extracellular | 42.33 | 47.26 |
| Solyc02g078850.1.1 | Tomato | extracellular, nucleus | 41.72 | 46.9 |
| CDY40955 | Canola | extracellular | 43.56 | 45.81 |
| GSMUA_Achr5P01900_001 | Banana | extracellular | 38.04 | 44.93 |
| Bra027092.1-P | Field mustard | endoplasmic reticulum, extracellular, vacuole | 42.33 | 44.52 |
| CDY12893 | Canola | endoplasmic reticulum, extracellular, vacuole | 42.33 | 44.52 |
| GSMUA_Achr7P00710_001 | Banana | extracellular | 38.65 | 44.37 |
| CDY31419 | Canola | extracellular | 21.47 | 43.75 |
| KRH21551 | Soybean | cytosol, extracellular, mitochondrion, vacuole | 44.79 | 43.45 |
| PGSC0003DMT400057614 | Potato | extracellular | 40.49 | 42.86 |
| AT1G61255.1 | Thale cress | extracellular | 36.81 | 41.96 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G290900.1 | EnsemblPlantsGene:TraesCS4A01G290900 | PANTHER:PTHR34789 | PANTHER:PTHR34789:SF1 | PFscan:PS51257 | SEG:seg |
| SignalP:SignalP-noTM | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr4A:-:594367077..594367568
Molecular Weight (calculated)
15783.2 Da
IEP (calculated)
9.955
GRAVY (calculated)
-0.109
Length
163 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGIRRAPAL LLLLALACTP ALAARDVSSS AAKAKTKYPS GPAPGKKPAK PYVPPATKPP GSGAVDGGGM PAIPGFGTIP GFTVPGMGGG WGGGYGGPDG
101: GYSRGGVAAS TTVCSEKGPC YKKKLTCPKK CFSSYSGAGK GYGGGGGGGG CTVDCKTKCI AYC
101: GYSRGGVAAS TTVCSEKGPC YKKKLTCPKK CFSSYSGAGK GYGGGGGGGG CTVDCKTKCI AYC
001: MFTKSILLAS LLIIILVSAT ESARQKSGND GLGFGGVPGS GFIPGFGNGF PGTGVGGGYG GGFGGPSGGF GKGGVVRPTV TCKEKGPCNG KKLRCPAKCF
101: KSFSRSGKGY GGGGGGGGCT MDCKKKCIAY C
101: KSFSRSGKGY GGGGGGGGCT MDCKKKCIAY C
Arabidopsis Description
AT4g21620/F17L22_80 [Source:UniProtKB/TrEMBL;Acc:Q9SVT5]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.