Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 9
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P30210_001 | Banana | cytosol, extracellular, plastid | 39.13 | 67.5 |
| GSMUA_Achr7P00710_001 | Banana | extracellular | 64.49 | 62.68 |
| GSMUA_Achr4P32330_001 | Banana | extracellular | 64.49 | 61.38 |
| VIT_13s0073g00040.t01 | Wine grape | cytosol, extracellular, plastid | 34.06 | 58.02 |
| GSMUA_Achr9P26340_001 | Banana | extracellular | 52.9 | 52.52 |
| AT4G21620.1 | Thale cress | extracellular | 49.28 | 51.91 |
| VIT_00s0301g00040.t01 | Wine grape | extracellular | 55.07 | 49.03 |
| Bra038769.1-P | Field mustard | extracellular | 47.1 | 48.87 |
| CDX94042 | Canola | extracellular | 47.1 | 48.87 |
| CDX98689 | Canola | extracellular | 46.38 | 48.12 |
| CDX76436 | Canola | extracellular | 44.93 | 47.33 |
| Bra020903.1-P | Field mustard | extracellular | 44.93 | 47.33 |
| CDY40955 | Canola | extracellular | 52.17 | 46.45 |
| CDY12893 | Canola | endoplasmic reticulum, extracellular, vacuole | 52.17 | 46.45 |
| Bra027092.1-P | Field mustard | endoplasmic reticulum, extracellular, vacuole | 52.17 | 46.45 |
| KRH10772 | Soybean | extracellular | 47.83 | 45.21 |
| Solyc10g009190.1.1 | Tomato | nucleus | 40.58 | 44.8 |
| PGSC0003DMT400028050 | Potato | extracellular | 38.41 | 42.4 |
| KRH21551 | Soybean | cytosol, extracellular, mitochondrion, vacuole | 51.45 | 42.26 |
| Solyc02g078850.1.1 | Tomato | extracellular, nucleus | 42.75 | 40.69 |
| TraesCS4D01G020900.1 | Wheat | extracellular | 47.1 | 40.62 |
| AT1G61255.1 | Thale cress | extracellular | 41.3 | 39.86 |
| Zm00001d013551_P001 | Maize | endoplasmic reticulum, plasma membrane | 47.1 | 39.39 |
| Os03t0676300-01 | Rice | extracellular | 46.38 | 39.02 |
| TraesCS4A01G290900.1 | Wheat | extracellular | 44.93 | 38.04 |
| PGSC0003DMT400057614 | Potato | extracellular | 42.03 | 37.66 |
| Zm00001d031191_P001 | Maize | extracellular | 39.86 | 35.26 |
| EER93676 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 46.38 | 35.16 |
| CDY31419 | Canola | extracellular | 18.84 | 32.5 |
| KXG24122 | Sorghum | plastid | 47.1 | 32.34 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr5P01900_001 | EnsemblPlants:GSMUA_Achr5T01900_001 | EnsemblPlantsGene:GSMUA_Achr5G01900_001 | PANTHER:PTHR34789 | PANTHER:PTHR34789:SF1 | SEG:seg |
| SignalP:SignalP-noTM | UniParc:UPI0002949225 | UniProt:M0SUW9 | MapMan:35.2 | : | : |
Description
Putative nucleic acid binding protein (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr5G01900_001]
Coordinates
chr5:-:1163588..1164004
Molecular Weight (calculated)
14095.8 Da
IEP (calculated)
8.405
GRAVY (calculated)
-0.212
Length
138 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKTSLLLVL VLVLATADDL EAELPKGKGH GEDDDGAGIP WFGADPGRFF GHGSRFHVPA GIGGGWGGGF GGPSGGYARG GVVRPSVVCS EKGPCHKKRV
101: TCPDSCFTSF SRSGKGYGGG GGGGRCTIDC KKRCIAYC
101: TCPDSCFTSF SRSGKGYGGG GGGGRCTIDC KKRCIAYC
001: MFTKSILLAS LLIIILVSAT ESARQKSGND GLGFGGVPGS GFIPGFGNGF PGTGVGGGYG GGFGGPSGGF GKGGVVRPTV TCKEKGPCNG KKLRCPAKCF
101: KSFSRSGKGY GGGGGGGGCT MDCKKKCIAY C
101: KSFSRSGKGY GGGGGGGGCT MDCKKKCIAY C
Arabidopsis Description
AT4g21620/F17L22_80 [Source:UniProtKB/TrEMBL;Acc:Q9SVT5]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.