Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- plastid 2
- extracellular 4
- golgi 4
- plasma membrane 5
- endoplasmic reticulum 5
- vacuole 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P30210_001 | Banana | cytosol, extracellular, plastid | 32.12 | 66.25 |
| EER93676 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 67.88 | 61.54 |
| TraesCS4D01G020900.1 | Wheat | extracellular | 56.97 | 58.75 |
| Os03t0676300-01 | Rice | extracellular | 57.58 | 57.93 |
| VIT_13s0073g00040.t01 | Wine grape | cytosol, extracellular, plastid | 27.27 | 55.56 |
| TraesCS4A01G290900.1 | Wheat | extracellular | 54.55 | 55.21 |
| Bra038769.1-P | Field mustard | extracellular | 44.24 | 54.89 |
| CDX98689 | Canola | extracellular | 43.64 | 54.14 |
| CDX94042 | Canola | extracellular | 43.03 | 53.38 |
| AT4G21620.1 | Thale cress | extracellular | 41.21 | 51.91 |
| Bra020903.1-P | Field mustard | extracellular | 41.21 | 51.91 |
| CDX76436 | Canola | extracellular | 41.21 | 51.91 |
| GSMUA_Achr7P00710_001 | Banana | extracellular | 44.24 | 51.41 |
| Zm00001d031191_P001 | Maize | extracellular | 46.67 | 49.36 |
| Solyc10g009190.1.1 | Tomato | nucleus | 36.97 | 48.8 |
| GSMUA_Achr4P32330_001 | Banana | extracellular | 42.42 | 48.28 |
| GSMUA_Achr9P26340_001 | Banana | extracellular | 40.61 | 48.2 |
| PGSC0003DMT400028050 | Potato | extracellular | 35.76 | 47.2 |
| GSMUA_Achr5P01900_001 | Banana | extracellular | 39.39 | 47.1 |
| VIT_00s0301g00040.t01 | Wine grape | extracellular | 43.03 | 45.81 |
| CDY40955 | Canola | extracellular | 42.42 | 45.16 |
| KRH10772 | Soybean | extracellular | 39.39 | 44.52 |
| CDY12893 | Canola | endoplasmic reticulum, extracellular, vacuole | 41.82 | 44.52 |
| Bra027092.1-P | Field mustard | endoplasmic reticulum, extracellular, vacuole | 41.82 | 44.52 |
| AT1G61255.1 | Thale cress | extracellular | 37.58 | 43.36 |
| Solyc02g078850.1.1 | Tomato | extracellular, nucleus | 36.97 | 42.07 |
| KRH21551 | Soybean | cytosol, extracellular, mitochondrion, vacuole | 41.82 | 41.07 |
| PGSC0003DMT400057614 | Potato | extracellular | 37.58 | 40.26 |
| CDY31419 | Canola | extracellular | 19.39 | 40.0 |
Protein Annotations
| EMBL:BT086061 | EnsemblPlants:Zm00001d013551_P001 | EnsemblPlants:Zm00001d013551_T001 | EnsemblPlantsGene:Zm00001d013551 | EntrezGene:100283363 | PANTHER:PTHR34789 |
| PANTHER:PTHR34789:SF1 | ProteinID:AQK63859.1 | SEG:seg | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0001A4BF18 |
| UniProt:C4J5G4 | MapMan:35.2 | : | : | : | : |
Description
glycine-rich protein
Coordinates
chr5:-:14090858..14091355
Molecular Weight (calculated)
15921.3 Da
IEP (calculated)
9.853
GRAVY (calculated)
0.101
Length
165 amino acids
Sequence
(BLAST)
(BLAST)
001: MPTATATATA APRHAALFLP LLLLLLGLHA TSAAAARAGV AVDAELTSTK PSPVPKKPSV KPPGPGAASP TFPGFGIPGM GGFGIPGMGA GGWGGGYGGP
101: AGGYARGGVV APTVTCSEKG PCYRKKVTCP KKCFSSYSGA GKGYGGGGGG GSCTVDCKVK CTAYC
101: AGGYARGGVV APTVTCSEKG PCYRKKVTCP KKCFSSYSGA GKGYGGGGGG GSCTVDCKVK CTAYC
001: MFTKSILLAS LLIIILVSAT ESARQKSGND GLGFGGVPGS GFIPGFGNGF PGTGVGGGYG GGFGGPSGGF GKGGVVRPTV TCKEKGPCNG KKLRCPAKCF
101: KSFSRSGKGY GGGGGGGGCT MDCKKKCIAY C
101: KSFSRSGKGY GGGGGGGGCT MDCKKKCIAY C
Arabidopsis Description
AT4g21620/F17L22_80 [Source:UniProtKB/TrEMBL;Acc:Q9SVT5]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.