Factsheet for PGSC0003DMT400058231

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 3
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400084737

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G17930.1	PGSC0003DMT400084737	AT1G27300.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g006440.2.1	Tomato	plastid	83.92	84.77
KRH60551	Soybean	plastid	59.8	58.05
KRH41862	Soybean	plastid	59.3	57.84
VIT_17s0000g02160.t01	Wine grape	plastid	57.79	54.76
Bra022262.1-P	Field mustard	plastid	50.25	53.19
CDX92177	Canola	plastid	50.25	53.19
CDX95803	Canola	plastid	50.25	53.19
GSMUA_Achr8P23940_001	Banana	plastid	53.27	52.22
AT3G17930.1	Thale cress	plastid	49.75	52.11
Os01t0805200-01	Rice	plastid	52.76	50.24
EES03769	Sorghum	plastid	49.75	49.5
TraesCS3B01G362500.2	Wheat	plastid	50.25	48.08
HORVU3Hr1G078830.2	Barley	plastid	49.75	47.83
Zm00001d043168_P001	Maize	plastid	49.25	47.8
TraesCS3D01G325900.1	Wheat	plastid	49.75	47.6
TraesCS3A01G332400.1	Wheat	plastid	48.74	46.63

Protein Annotations

MapMan:1.1.2.9.6	EntrezGene:102581786	InterPro:DUF3007	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008150	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009987
GO:GO:0010190	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	UniProt:M1C2B2	PFAM:PF11460
EnsemblPlantsGene:PGSC0003DMG400022612	PGSC:PGSC0003DMG400022612	EnsemblPlants:PGSC0003DMT400058231	PANTHER:PTHR35734	PANTHER:PTHR35734:SF1	TMHMM:TMhelix
UniParc:UPI0002956F9E	SEG:seg	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400022612]

Coordinates

chr5:+:6737257..6739790

Molecular Weight (calculated)

21953.8 Da

IEP (calculated)

9.371

GRAVY (calculated)

-0.152

Length

199 amino acids

Sequence
(BLAST)

001: MASTTYGGGL LCKTRVSISS FPLMQPKMRP EITYSQRHPR VGTSSLLRNV SHNMGMKKVP RMITRASSEP SGSSDGALGQ DKACFTPFGY TRKDVLLIGV
101: GVTLLGVGLK SGLEFLGFDP LQAGNVVQLV LVLGLTVGWI STYIFRVSNK EMTYAQQLRD YESKVMEKRL ESLTEAELQV LLEQVEEEKT RLTSGEEVK

Best Arabidopsis Sequence Match ( AT3G17930.1 )
(BLAST)

001: MASLPFGVSN LCRNQEVLSA SVRLLPVGRQ TTGFGAAKKV LYRFEGHRLS SSVEKGEKQR MRCRVSSNST ETEDDSATKT KTTPFGYTRK DVILIGVGVT
101: ALGIGLESGL EYVGVDPLQA GNAVQLILVL GLTLGWISTY IFRVGNKEMT YAQQLRDYES QVMQKRLESL SEAELEALMA QVDEEKTKVE

Arabidopsis Description

DAC [Source:UniProtKB/TrEMBL;Acc:A0A178VNF6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.