Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS2A01G346700.1 | |
| TraesCS2B01G365000.1 | |
| TraesCS2D01G345400.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G17930.1 | TraesCS2A01G346700.1 | AT1G27300.1 | 21798944 |
| AT3G17930.1 | TraesCS2B01G365000.1 | AT1G27300.1 | 21798944 |
| AT3G17930.1 | TraesCS2D01G345400.1 | AT1G27300.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G332400.1 | Wheat | plastid | 89.9 | 89.9 |
| TraesCS3B01G362500.2 | Wheat | plastid | 87.98 | 87.98 |
| HORVU3Hr1G078830.2 | Barley | plastid | 83.65 | 84.06 |
| Os01t0805200-01 | Rice | plastid | 65.87 | 65.55 |
| EES03769 | Sorghum | plastid | 55.29 | 57.5 |
| Zm00001d043168_P001 | Maize | plastid | 55.77 | 56.59 |
| GSMUA_Achr8P23940_001 | Banana | plastid | 50.48 | 51.72 |
| PGSC0003DMT400058231 | Potato | plastid | 47.6 | 49.75 |
| CDX92177 | Canola | plastid | 44.23 | 48.94 |
| Solyc05g006440.2.1 | Tomato | plastid | 46.15 | 48.73 |
| CDX95803 | Canola | plastid | 43.75 | 48.4 |
| Bra022262.1-P | Field mustard | plastid | 43.27 | 47.87 |
| AT3G17930.1 | Thale cress | plastid | 43.27 | 47.37 |
| VIT_17s0000g02160.t01 | Wine grape | plastid | 47.6 | 47.14 |
| KRH41862 | Soybean | plastid | 45.67 | 46.57 |
| KRH60551 | Soybean | plastid | 45.19 | 45.85 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G325900.1 | EnsemblPlantsGene:TraesCS3D01G325900 | InterPro:DUF3007 | ncoils:Coil | PANTHER:PTHR35734 | PANTHER:PTHR35734:SF1 |
| PFAM:PF11460 | SEG:seg | TMHMM:TMhelix | MapMan:1.1.2.9.6 | : | : |
Description
No Description!
Coordinates
chr3D:-:438469592..438470664
Molecular Weight (calculated)
22711.5 Da
IEP (calculated)
10.194
GRAVY (calculated)
-0.251
Length
208 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPAALSAPV LRVSARSTGT RAAAPAPAGG LRFGKTACQH SGHSGQAVLR SKVLLRPVGQ RRRLALRSSV DDSKATDDKV EFGYSRKDVL LIGVGVTLLG
101: YGLKSGLEFV GVDPLQAGNV VQLFIVLGMT VGWISSYMIR VANKDMTYAT QLRNYEKQVM EKRLESLSEA ELQVLLEQVE EEKERLPPTR RDQGITINRK
201: TEDQTTAN
101: YGLKSGLEFV GVDPLQAGNV VQLFIVLGMT VGWISSYMIR VANKDMTYAT QLRNYEKQVM EKRLESLSEA ELQVLLEQVE EEKERLPPTR RDQGITINRK
201: TEDQTTAN
001: MASLPFGVSN LCRNQEVLSA SVRLLPVGRQ TTGFGAAKKV LYRFEGHRLS SSVEKGEKQR MRCRVSSNST ETEDDSATKT KTTPFGYTRK DVILIGVGVT
101: ALGIGLESGL EYVGVDPLQA GNAVQLILVL GLTLGWISTY IFRVGNKEMT YAQQLRDYES QVMQKRLESL SEAELEALMA QVDEEKTKVE
101: ALGIGLESGL EYVGVDPLQA GNAVQLILVL GLTLGWISTY IFRVGNKEMT YAQQLRDYES QVMQKRLESL SEAELEALMA QVDEEKTKVE
Arabidopsis Description
DAC [Source:UniProtKB/TrEMBL;Acc:A0A178VNF6]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.