Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 9
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plastid:
21433289
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0509600-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G17930.1 | Os02t0509600-01 | AT1G27300.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES03769 | Sorghum | plastid | 63.16 | 66.0 |
| TraesCS3A01G332400.1 | Wheat | plastid | 65.55 | 65.87 |
| TraesCS3D01G325900.1 | Wheat | plastid | 65.55 | 65.87 |
| Zm00001d043168_P001 | Maize | plastid | 63.64 | 64.88 |
| TraesCS3B01G362500.2 | Wheat | plastid | 63.64 | 63.94 |
| HORVU3Hr1G078830.2 | Barley | plastid | 62.68 | 63.28 |
| Solyc05g006440.2.1 | Tomato | plastid | 49.76 | 52.79 |
| PGSC0003DMT400058231 | Potato | plastid | 50.24 | 52.76 |
| GSMUA_Achr8P23940_001 | Banana | plastid | 51.2 | 52.71 |
| CDX92177 | Canola | plastid | 47.37 | 52.66 |
| CDX95803 | Canola | plastid | 47.37 | 52.66 |
| Bra022262.1-P | Field mustard | plastid | 46.89 | 52.13 |
| KRH60551 | Soybean | plastid | 49.28 | 50.24 |
| KRH41862 | Soybean | plastid | 48.8 | 50.0 |
| AT3G17930.1 | Thale cress | plastid | 44.5 | 48.95 |
| VIT_17s0000g02160.t01 | Wine grape | plastid | 47.85 | 47.62 |
Protein Annotations
| EnsemblPlants:Os01t0805200-01 | EnsemblPlantsGene:Os01g0805200 | EntrezGene:4327543 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:DUF3007 | ncoils:Coil | PANTHER:PTHR35734 | PANTHER:PTHR35734:SF1 | PFAM:PF11460 | ProteinID:BAB92268.1 |
| ProteinID:BAF06472.1 | ProteinID:BAS74826.1 | ProteinID:EAZ13872.1 | RefSeq:XP_015614871.1 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI00000A200D | UniProt:Q8LR94 | MapMan:1.1.2.9.6 | : | : | : |
Description
Protein of unknown function DUF3007 domain containing protein. (Os01t0805200-01);Protein of unknown function DUF3007 domain containing protein. (Os01t0805200-02)
Coordinates
chr1:-:34138399..34139709
Molecular Weight (calculated)
22860.6 Da
IEP (calculated)
9.639
GRAVY (calculated)
-0.155
Length
209 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPAALAAPI ASISPSSAGR VTAAAAGLRS ARMASSPVAQ PIGEAVVLRP NQMFRSVLRQ RRRLVVRSSS SDETNSTTEE KTPFGYTRKD VLLIGVGVTL
101: LGYGLKYGLE LVGVDPLQAG NAVQLIIVLG MTVGWISTYM FRVANKDMTY AQQLRDYEKQ VMEKRLESLT EAELQVLLEQ VEEEKQRLTP VRDQGVTFTR
201: KTEDQANAS
101: LGYGLKYGLE LVGVDPLQAG NAVQLIIVLG MTVGWISTYM FRVANKDMTY AQQLRDYEKQ VMEKRLESLT EAELQVLLEQ VEEEKQRLTP VRDQGVTFTR
201: KTEDQANAS
001: MASLPFGVSN LCRNQEVLSA SVRLLPVGRQ TTGFGAAKKV LYRFEGHRLS SSVEKGEKQR MRCRVSSNST ETEDDSATKT KTTPFGYTRK DVILIGVGVT
101: ALGIGLESGL EYVGVDPLQA GNAVQLILVL GLTLGWISTY IFRVGNKEMT YAQQLRDYES QVMQKRLESL SEAELEALMA QVDEEKTKVE
101: ALGIGLESGL EYVGVDPLQA GNAVQLILVL GLTLGWISTY IFRVGNKEMT YAQQLRDYES QVMQKRLESL SEAELEALMA QVDEEKTKVE
Arabidopsis Description
DAC [Source:UniProtKB/TrEMBL;Acc:A0A178VNF6]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.