Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- nucleus 1
- plasma membrane 2
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_01s0010g03800.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G17930.1 | VIT_01s0010g03800.t01 | AT1G27300.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH41862 | Soybean | plastid | 60.48 | 62.25 |
| KRH60551 | Soybean | plastid | 60.0 | 61.46 |
| Solyc05g006440.2.1 | Tomato | plastid | 54.29 | 57.87 |
| PGSC0003DMT400058231 | Potato | plastid | 54.76 | 57.79 |
| GSMUA_Achr8P23940_001 | Banana | plastid | 54.76 | 56.65 |
| CDX92177 | Canola | plastid | 50.0 | 55.85 |
| CDX95803 | Canola | plastid | 50.0 | 55.85 |
| Bra022262.1-P | Field mustard | plastid | 49.52 | 55.32 |
| AT3G17930.1 | Thale cress | plastid | 50.0 | 55.26 |
| EES03769 | Sorghum | plastid | 47.14 | 49.5 |
| Os01t0805200-01 | Rice | plastid | 47.62 | 47.85 |
| TraesCS3A01G332400.1 | Wheat | plastid | 47.14 | 47.6 |
| TraesCS3D01G325900.1 | Wheat | plastid | 47.14 | 47.6 |
| Zm00001d043168_P001 | Maize | plastid | 46.19 | 47.32 |
| HORVU3Hr1G078830.2 | Barley | plastid | 45.71 | 46.38 |
| TraesCS3B01G362500.2 | Wheat | plastid | 45.71 | 46.15 |
Protein Annotations
| MapMan:1.1.2.9.6 | EntrezGene:100245848 | wikigene:100245848 | ProteinID:CBI15594 | ProteinID:CBI15594.3 | UniProt:D7SJD3 |
| InterPro:DUF3007 | EMBL:FN594950 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0008150 | GO:GO:0009535 | GO:GO:0009536 | GO:GO:0009579 | GO:GO:0009987 | GO:GO:0010190 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | EntrezGene:LOC100245848 | wikigene:LOC100245848 | PFAM:PF11460 |
| PANTHER:PTHR35734 | PANTHER:PTHR35734:SF1 | TIGR:TC54227 | TMHMM:TMhelix | UniParc:UPI0001BE0B0A | ArrayExpress:VIT_17s0000g02160 |
| EnsemblPlantsGene:VIT_17s0000g02160 | EnsemblPlants:VIT_17s0000g02160.t01 | unigene:Vvi.6828 | RefSeq:XP_002278927 | RefSeq:XP_002278927.1 | RefSeq:XP_010663693.1 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr17:+:1776211..1784655
Molecular Weight (calculated)
22959.9 Da
IEP (calculated)
9.406
GRAVY (calculated)
-0.129
Length
210 amino acids
Sequence
(BLAST)
(BLAST)
001: MASLPLKSPN CSIFCERGSI SIMGVSALPL LQQRVRAVGG LMRGSIISQS AYTKETSTFP RKGSNSMIPK KLVFTPRSSG SSNSDGSKDD STNQDKVPFG
101: YNRKDVLLIG VGVTVLGIGL KSGLEFVGVD PLQAGNVVQL VLVLGLTIGW ISTYIFRVSN KEMTYAQQLR DYENKVMQKR LEGLTEAELE VLLEQVEEEK
201: RRLVSGEQVN
101: YNRKDVLLIG VGVTVLGIGL KSGLEFVGVD PLQAGNVVQL VLVLGLTIGW ISTYIFRVSN KEMTYAQQLR DYENKVMQKR LEGLTEAELE VLLEQVEEEK
201: RRLVSGEQVN
001: MASLPFGVSN LCRNQEVLSA SVRLLPVGRQ TTGFGAAKKV LYRFEGHRLS SSVEKGEKQR MRCRVSSNST ETEDDSATKT KTTPFGYTRK DVILIGVGVT
101: ALGIGLESGL EYVGVDPLQA GNAVQLILVL GLTLGWISTY IFRVGNKEMT YAQQLRDYES QVMQKRLESL SEAELEALMA QVDEEKTKVE
101: ALGIGLESGL EYVGVDPLQA GNAVQLILVL GLTLGWISTY IFRVGNKEMT YAQQLRDYES QVMQKRLESL SEAELEALMA QVDEEKTKVE
Arabidopsis Description
DAC [Source:UniProtKB/TrEMBL;Acc:A0A178VNF6]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.