Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G17930.1 | KRG97393 | AT1G27300.1 | 21798944 |
| AT3G17930.1 | KRH31520 | AT1G27300.1 | 21798944 |
| AT3G17930.1 | KRH76090 | AT1G27300.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH60551 | Soybean | plastid | 92.16 | 91.71 |
| VIT_17s0000g02160.t01 | Wine grape | plastid | 62.25 | 60.48 |
| PGSC0003DMT400058231 | Potato | plastid | 57.84 | 59.3 |
| Solyc05g006440.2.1 | Tomato | plastid | 55.88 | 57.87 |
| Bra022262.1-P | Field mustard | plastid | 51.47 | 55.85 |
| CDX92177 | Canola | plastid | 51.47 | 55.85 |
| CDX95803 | Canola | plastid | 51.47 | 55.85 |
| AT3G17930.1 | Thale cress | plastid | 50.0 | 53.68 |
| GSMUA_Achr8P23940_001 | Banana | plastid | 51.47 | 51.72 |
| EES03769 | Sorghum | plastid | 50.0 | 51.0 |
| Zm00001d043168_P001 | Maize | plastid | 49.51 | 49.27 |
| Os01t0805200-01 | Rice | plastid | 50.0 | 48.8 |
| TraesCS3D01G325900.1 | Wheat | plastid | 46.57 | 45.67 |
| TraesCS3A01G332400.1 | Wheat | plastid | 46.08 | 45.19 |
| HORVU3Hr1G078830.2 | Barley | plastid | 45.1 | 44.44 |
| TraesCS3B01G362500.2 | Wheat | plastid | 44.61 | 43.75 |
Protein Annotations
| EMBL:ACUP02004781 | EnsemblPlants:KRH41862 | EnsemblPlantsGene:GLYMA_08G055300 | EntrezGene:100790836 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:DUF3007 | ncoils:Coil | PANTHER:PTHR35734 | PANTHER:PTHR35734:SF1 | PFAM:PF11460 |
| ProteinID:KRH41862 | ProteinID:KRH41862.1 | ProteinID:KRH41863.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000233825C |
| UniProt:I1KQL7 | MapMan:1.1.2.9.6 | : | : | : | : |
Description
hypothetical protein
Coordinates
chr8:+:4249073..4252090
Molecular Weight (calculated)
22756.4 Da
IEP (calculated)
9.137
GRAVY (calculated)
-0.181
Length
204 amino acids
Sequence
(BLAST)
(BLAST)
001: MAYVPHGNAN FNSLFLKFAI SHVGISSLPF LHPGLKSCTV FNRGTLIRQC LNGKRNFSLS EKRFNCKFSK KDRFFIPRSS SSSNSSGSTD EPSNETEKTP
101: FGYTRKDVLL IGLGVTLLGI GLKSGLEFVG VDSLQAGNVV QLVLVLGLTV GWISTYIFRV SNKEMTYAQQ LRDYESKVME KRLESLTEAE LQALLEEVEE
201: EKSR
101: FGYTRKDVLL IGLGVTLLGI GLKSGLEFVG VDSLQAGNVV QLVLVLGLTV GWISTYIFRV SNKEMTYAQQ LRDYESKVME KRLESLTEAE LQALLEEVEE
201: EKSR
001: MASLPFGVSN LCRNQEVLSA SVRLLPVGRQ TTGFGAAKKV LYRFEGHRLS SSVEKGEKQR MRCRVSSNST ETEDDSATKT KTTPFGYTRK DVILIGVGVT
101: ALGIGLESGL EYVGVDPLQA GNAVQLILVL GLTLGWISTY IFRVGNKEMT YAQQLRDYES QVMQKRLESL SEAELEALMA QVDEEKTKVE
101: ALGIGLESGL EYVGVDPLQA GNAVQLILVL GLTLGWISTY IFRVGNKEMT YAQQLRDYES QVMQKRLESL SEAELEALMA QVDEEKTKVE
Arabidopsis Description
DAC [Source:UniProtKB/TrEMBL;Acc:A0A178VNF6]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.