Factsheet for Solyc05g006440.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, peroxisome, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	mitochondrion
Plant-mPloc:	peroxisome, plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22908117
extracellular: 29876421

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc05g015640.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G17930.1	Solyc05g015640.2.1	AT1G27300.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400058231	Potato	plastid	84.77	83.92
KRH60551	Soybean	plastid	58.88	56.59
KRH41862	Soybean	plastid	57.87	55.88
VIT_17s0000g02160.t01	Wine grape	plastid	57.87	54.29
AT3G17930.1	Thale cress	plastid	50.25	52.11
GSMUA_Achr8P23940_001	Banana	plastid	53.3	51.72
Bra022262.1-P	Field mustard	plastid	48.73	51.06
CDX92177	Canola	plastid	48.73	51.06
CDX95803	Canola	plastid	48.73	51.06
Os01t0805200-01	Rice	plastid	52.79	49.76
EES03769	Sorghum	plastid	49.24	48.5
Zm00001d043168_P001	Maize	plastid	48.73	46.83
HORVU3Hr1G078830.2	Barley	plastid	48.73	46.38
TraesCS3B01G362500.2	Wheat	plastid	48.73	46.15
TraesCS3D01G325900.1	Wheat	plastid	48.73	46.15
TraesCS3A01G332400.1	Wheat	plastid	47.72	45.19

Protein Annotations

MapMan:1.1.2.9.6	InterPro:DUF3007	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0008150	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009987	GO:GO:0010190
GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	UniProt:K4BWH1	PFAM:PF11460	PANTHER:PTHR35734
PANTHER:PTHR35734:SF1	EnsemblPlantsGene:Solyc05g006440.2	EnsemblPlants:Solyc05g006440.2.1	TMHMM:TMhelix	UniParc:UPI00027673D0	SEG:seg

Description

No Description!

Coordinates

chr5:-:1069478..1072256

Molecular Weight (calculated)

21733.5 Da

IEP (calculated)

9.430

GRAVY (calculated)

-0.080

Length

197 amino acids

Sequence
(BLAST)

001: MASTGSLLCK CRVSSLMSIS SFPLMQPITR PEITYSQRHV RVGTSSVLRN VSHNMSMKKV PRMITRASSE PSGSSDGALG QNKTPFGYTR KDVILIGVGV
101: TLLGVGLKSG LEFLGFDPLQ AGNVVQLVLV LGLTVGWIST YIFRVSNKEM TYAQQLRDYE SKVMEKRLES LTEAELQVLL EQVEEEKTRL TSGEEVK

Best Arabidopsis Sequence Match ( AT3G17930.1 )
(BLAST)

001: MASLPFGVSN LCRNQEVLSA SVRLLPVGRQ TTGFGAAKKV LYRFEGHRLS SSVEKGEKQR MRCRVSSNST ETEDDSATKT KTTPFGYTRK DVILIGVGVT
101: ALGIGLESGL EYVGVDPLQA GNAVQLILVL GLTLGWISTY IFRVGNKEMT YAQQLRDYES QVMQKRLESL SEAELEALMA QVDEEKTKVE

Arabidopsis Description

DAC [Source:UniProtKB/TrEMBL;Acc:A0A178VNF6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.