Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- mitochondrion 2
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G17930.1 | CDX84933 | AT1G27300.1 | 21798944 |
| AT3G17930.1 | CDY03907 | AT1G27300.1 | 21798944 |
| AT3G17930.1 | CDY15722 | AT1G27300.1 | 21798944 |
| AT3G17930.1 | CDY27605 | AT1G27300.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX92177 | Canola | plastid | 97.34 | 97.34 |
| Bra022262.1-P | Field mustard | plastid | 95.74 | 95.74 |
| AT3G17930.1 | Thale cress | plastid | 78.19 | 77.37 |
| KRH41862 | Soybean | plastid | 55.85 | 51.47 |
| KRH60551 | Soybean | plastid | 55.85 | 51.22 |
| PGSC0003DMT400058231 | Potato | plastid | 53.19 | 50.25 |
| VIT_17s0000g02160.t01 | Wine grape | plastid | 55.85 | 50.0 |
| Solyc05g006440.2.1 | Tomato | plastid | 51.06 | 48.73 |
| Os01t0805200-01 | Rice | plastid | 52.66 | 47.37 |
| Zm00001d043168_P001 | Maize | plastid | 51.6 | 47.32 |
| GSMUA_Achr8P23940_001 | Banana | plastid | 50.53 | 46.8 |
| EES03769 | Sorghum | plastid | 49.47 | 46.5 |
| TraesCS3D01G325900.1 | Wheat | plastid | 48.4 | 43.75 |
| TraesCS3A01G332400.1 | Wheat | plastid | 47.87 | 43.27 |
| TraesCS3B01G362500.2 | Wheat | plastid | 47.87 | 43.27 |
| HORVU3Hr1G078830.2 | Barley | plastid | 47.34 | 43.0 |
Protein Annotations
| EnsemblPlants:CDX95803 | EnsemblPlantsGene:GSBRNA2T00101744001 | GO:A0A078E8S4 | InterPro:DUF3007 | ncoils:Coil | PANTHER:PTHR35734 |
| PANTHER:PTHR35734:SF1 | PFAM:PF11460 | ProteinID:CDX95803 | ProteinID:CDX95803.1 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI0004EED32B | MapMan:1.1.2.9.6 | : | : | : | : |
Description
BnaC05g35540D
Coordinates
chrLK031891:+:380998..382190
Molecular Weight (calculated)
20707.0 Da
IEP (calculated)
9.032
GRAVY (calculated)
-0.239
Length
188 amino acids
Sequence
(BLAST)
(BLAST)
001: MASLPYGVSN LCRNQEVLSA AVQIRPTGRQ ITGGVRAAKR VLYNGLSSSV KIRASKQRMR CRVSSESSTE TEEDSATKTK KTPFGYTRKD VLLIGVGVTA
101: LGIGLESGLE YVGVDPLQAG NAVQLILVLG LTLGWISTYI FRVGNKEMTY AQQLRDYESQ VMQKRLESLS EAELEALMEQ VDEEKRQV
101: LGIGLESGLE YVGVDPLQAG NAVQLILVLG LTLGWISTYI FRVGNKEMTY AQQLRDYESQ VMQKRLESLS EAELEALMEQ VDEEKRQV
001: MASLPFGVSN LCRNQEVLSA SVRLLPVGRQ TTGFGAAKKV LYRFEGHRLS SSVEKGEKQR MRCRVSSNST ETEDDSATKT KTTPFGYTRK DVILIGVGVT
101: ALGIGLESGL EYVGVDPLQA GNAVQLILVL GLTLGWISTY IFRVGNKEMT YAQQLRDYES QVMQKRLESL SEAELEALMA QVDEEKTKVE
101: ALGIGLESGL EYVGVDPLQA GNAVQLILVL GLTLGWISTY IFRVGNKEMT YAQQLRDYES QVMQKRLESL SEAELEALMA QVDEEKTKVE
Arabidopsis Description
DAC [Source:UniProtKB/TrEMBL;Acc:A0A178VNF6]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.