Factsheet for Zm00001d043168_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d016570_P001
Zm00001d050563_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G17930.1	Zm00001d016570_P001	AT1G27300.1	21798944
AT3G17930.1	Zm00001d050563_P001	AT1G27300.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES03769	Sorghum	plastid	89.27	91.5
Os01t0805200-01	Rice	plastid	64.88	63.64
TraesCS3B01G362500.2	Wheat	plastid	59.02	58.17
HORVU3Hr1G078830.2	Barley	plastid	58.54	57.97
TraesCS3A01G332400.1	Wheat	plastid	58.54	57.69
TraesCS3D01G325900.1	Wheat	plastid	56.59	55.77
GSMUA_Achr8P23940_001	Banana	plastid	53.17	53.69
CDX92177	Canola	plastid	47.32	51.6
CDX95803	Canola	plastid	47.32	51.6
Bra022262.1-P	Field mustard	plastid	46.83	51.06
KRH41862	Soybean	plastid	49.27	49.51
KRH60551	Soybean	plastid	49.27	49.27
PGSC0003DMT400058231	Potato	plastid	47.8	49.25
Solyc05g006440.2.1	Tomato	plastid	46.83	48.73
AT3G17930.1	Thale cress	plastid	44.39	47.89
VIT_17s0000g02160.t01	Wine grape	plastid	47.32	46.19

Protein Annotations

EMBL:BT037564	EnsemblPlants:Zm00001d043168_P001	EnsemblPlants:Zm00001d043168_T001	EnsemblPlantsGene:Zm00001d043168	EntrezGene:100277981	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	InterPro:DUF3007	ncoils:Coil	PANTHER:PTHR35734	PANTHER:PTHR35734:SF1
PFAM:PF11460	ProteinID:ONM37162.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI00017B7217	UniProt:B4FKC6
MapMan:1.1.2.9.6	:	:	:	:	:

Description

MAR-binding filament-like protein 1-1 isoform 2

Coordinates

chr3:+:190457202..190458582

Molecular Weight (calculated)

22350.1 Da

IEP (calculated)

10.328

GRAVY (calculated)

-0.173

Length

205 amino acids

Sequence
(BLAST)

001: MAPAPVAAPV ASVSRAAAAL APAGAVRSAR VASLHPFHSS TKIVLLPPRT GLLRSARQRR RLAARSSTSE SSTDDSQSPK QEKAPFGYTR KDVLLIGLGV
101: TAFGVGLKYG LELLGVDPLQ AGNVVQLLVV LGMTVGWIST YMFRVANKDM TYAHQLRDYE KQVMEKRLES LSEAELQALL EQVEEEKQRV PQVPEEPNAI
201: TFRKK

Best Arabidopsis Sequence Match ( AT3G17930.1 )
(BLAST)

001: MASLPFGVSN LCRNQEVLSA SVRLLPVGRQ TTGFGAAKKV LYRFEGHRLS SSVEKGEKQR MRCRVSSNST ETEDDSATKT KTTPFGYTRK DVILIGVGVT
101: ALGIGLESGL EYVGVDPLQA GNAVQLILVL GLTLGWISTY IFRVGNKEMT YAQQLRDYES QVMQKRLESL SEAELEALMA QVDEEKTKVE

Arabidopsis Description

DAC [Source:UniProtKB/TrEMBL;Acc:A0A178VNF6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.