Factsheet for HORVU3Hr1G078830.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plastid
Plant-mPloc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G084420.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G17930.1	HORVU2Hr1G084420.1	AT1G27300.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G332400.1	Wheat	plastid	86.47	86.06
TraesCS3B01G362500.2	Wheat	plastid	86.47	86.06
TraesCS3D01G325900.1	Wheat	plastid	84.06	83.65
Os01t0805200-01	Rice	plastid	63.28	62.68
EES03769	Sorghum	plastid	58.45	60.5
Zm00001d043168_P001	Maize	plastid	57.97	58.54
GSMUA_Achr8P23940_001	Banana	plastid	49.28	50.25
PGSC0003DMT400058231	Potato	plastid	47.83	49.75
Solyc05g006440.2.1	Tomato	plastid	46.38	48.73
CDX92177	Canola	plastid	43.48	47.87
CDX95803	Canola	plastid	43.0	47.34
Bra022262.1-P	Field mustard	plastid	42.51	46.81
VIT_17s0000g02160.t01	Wine grape	plastid	46.38	45.71
KRH60551	Soybean	plastid	44.93	45.37
AT3G17930.1	Thale cress	plastid	41.55	45.26
KRH41862	Soybean	plastid	44.44	45.1

Protein Annotations

EMBL:AK362073	EnsemblPlants:HORVU3Hr1G078830.2	EnsemblPlantsGene:HORVU3Hr1G078830	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:DUF3007	ncoils:Coil	PANTHER:PTHR35734	PANTHER:PTHR35734:SF1	PFAM:PF11460	SEG:seg
TMHMM:TMhelix	UniParc:UPI000200608B	UniProt:F2DDV6	MapMan:1.1.2.9.6	:	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DDV6]

Coordinates

chrchr3H:-:580440796..580443838

Molecular Weight (calculated)

22646.5 Da

IEP (calculated)

9.688

GRAVY (calculated)

-0.142

Length

207 amino acids

Sequence
(BLAST)

001: MAPAALSATV LRVSAGVRTA VAAPAGVLRF GKTACLHSGH SEGQAVLRSN ALLLRPVGQR RRSALRSSVD DSKATDDKVE FGYSRKDVLL IGVGVTLLGY
101: GLKSGLEFLG VDPLQAGNVV QLFIVLGMTV GWISSYMIRV ANKDMTYATQ LRNYEKQVME KRLESLSEAE LQVLLEQVEE EKERLPPMRR DQGITINRKT
201: EDQTTAN

Best Arabidopsis Sequence Match ( AT3G17930.1 )
(BLAST)

001: MASLPFGVSN LCRNQEVLSA SVRLLPVGRQ TTGFGAAKKV LYRFEGHRLS SSVEKGEKQR MRCRVSSNST ETEDDSATKT KTTPFGYTRK DVILIGVGVT
101: ALGIGLESGL EYVGVDPLQA GNAVQLILVL GLTLGWISTY IFRVGNKEMT YAQQLRDYES QVMQKRLESL SEAELEALMA QVDEEKTKVE

Arabidopsis Description

DAC [Source:UniProtKB/TrEMBL;Acc:A0A178VNF6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.