CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	plastid
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG97393
KRH31520
KRH76090

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G17930.1	KRG97393	AT1G27300.1	21798944
AT3G17930.1	KRH31520	AT1G27300.1	21798944
AT3G17930.1	KRH76090	AT1G27300.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH41862	Soybean	plastid	91.71	92.16
VIT_17s0000g02160.t01	Wine grape	plastid	61.46	60.0
PGSC0003DMT400058231	Potato	plastid	58.05	59.8
Solyc05g006440.2.1	Tomato	plastid	56.59	58.88
Bra022262.1-P	Field mustard	plastid	51.22	55.85
CDX92177	Canola	plastid	51.22	55.85
CDX95803	Canola	plastid	51.22	55.85
AT3G17930.1	Thale cress	plastid	49.27	53.16
GSMUA_Achr8P23940_001	Banana	plastid	51.71	52.22
EES03769	Sorghum	plastid	49.27	50.5
Os01t0805200-01	Rice	plastid	50.24	49.28
Zm00001d043168_P001	Maize	plastid	49.27	49.27
TraesCS3A01G332400.1	Wheat	plastid	47.8	47.12
TraesCS3B01G362500.2	Wheat	plastid	45.85	45.19
TraesCS3D01G325900.1	Wheat	plastid	45.85	45.19
HORVU3Hr1G078830.2	Barley	plastid	45.37	44.93

Protein Annotations

EMBL:ACUP02003368	EMBL:BT090894	EnsemblPlants:KRH60551	EnsemblPlantsGene:GLYMA_05G246900	EntrezGene:100306671	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	InterPro:DUF3007	ncoils:Coil	PANTHER:PTHR35734	PANTHER:PTHR35734:SF1
PFAM:PF11460	ProteinID:KRH60551	ProteinID:KRH60551.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0001B153AD
UniProt:C6T0E0	MapMan:1.1.2.9.6	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:42032313..42036009

Molecular Weight (calculated)

22571.1 Da

IEP (calculated)

8.902

GRAVY (calculated)

-0.147

Length

205 amino acids

Sequence
(BLAST)

001: MAYVPHGNAN CNSLFQKFAN SHVGISALPF LQPGLKSCTV FNRGTLIPLC LNGKRSFALS EKGFNCKFSK RERFSIPRSS SSSNSSGSTD ETSKETNVKT
101: PFGYTRKDVL LIGLGVTLLG IGLKSGLEFV GVDSLQAGNV VQLVLVLGLT VGWISTYIFR VSNKEMTYAQ QLRDYESKVM EKRLESLTEA ELQALLEEVE
201: EEKSR

Best Arabidopsis Sequence Match ( AT3G17930.1 )
(BLAST)

001: MASLPFGVSN LCRNQEVLSA SVRLLPVGRQ TTGFGAAKKV LYRFEGHRLS SSVEKGEKQR MRCRVSSNST ETEDDSATKT KTTPFGYTRK DVILIGVGVT
101: ALGIGLESGL EYVGVDPLQA GNAVQLILVL GLTLGWISTY IFRVGNKEMT YAQQLRDYES QVMQKRLESL SEAELEALMA QVDEEKTKVE

Arabidopsis Description

DAC [Source:UniProtKB/TrEMBL;Acc:A0A178VNF6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.