Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 2
- cytosol 2
- nucleus 1
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400071510 | |
| PGSC0003DMT400073246 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G39900.1 | PGSC0003DMT400071510 | AT4G19030.1 | 21798944 |
| AT4G39900.1 | PGSC0003DMT400073246 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g055250.2.1 | Tomato | cytosol, golgi, peroxisome | 76.59 | 81.77 |
| VIT_00s0665g00030.t01 | Wine grape | cytosol, nucleus, plasma membrane | 37.56 | 29.39 |
| CDY56499 | Canola | cytosol | 27.32 | 25.45 |
| KRH31298 | Soybean | cytosol | 29.76 | 24.8 |
| CDY63899 | Canola | peroxisome | 27.32 | 24.24 |
| Bra011824.1-P | Field mustard | cytosol, nucleus, peroxisome | 27.32 | 23.93 |
| CDX69376 | Canola | nucleus | 27.32 | 23.73 |
| AT4G39900.1 | Thale cress | peroxisome | 28.29 | 23.67 |
| Bra010648.1-P | Field mustard | cytosol | 26.83 | 23.31 |
| CDX90371 | Canola | cytosol | 26.83 | 23.31 |
| CDY59444 | Canola | cytosol, nucleus, peroxisome | 26.83 | 23.31 |
| KRG97575 | Soybean | cytosol | 27.32 | 22.31 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400004734 | EnsemblPlantsGene:PGSC0003DMG400001876 | EntrezGene:102585294 | PANTHER:PTHR34064 | PANTHER:PTHR34064:SF5 | PGSC:PGSC0003DMG400001876 |
| UniParc:UPI000295D0DC | UniProt:M0ZNV6 | MapMan:35.2 | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400001876]
Coordinates
chr4:+:50772763..50777482
Molecular Weight (calculated)
23332.9 Da
IEP (calculated)
8.461
GRAVY (calculated)
-0.503
Length
205 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVNSSQEVR SMIFASTFSL YDLSCINFQL GQRKQSQDSL NFVKLPDEGT KGPLCESHLD MVNLKTPISM DAQSNGGNHA NLKNDSSDAY GSYCLAIDID
101: KRKFDAPKST EEMNGNVKTD DYVSSMFQRE ISSLMGGKFM QQMMNNSFEL PKFACRDKCL TEKVYDTPSN RLRKYKRSAS FNSRRVVLLF SVIMQKVWLD
201: FTIEK
101: KRKFDAPKST EEMNGNVKTD DYVSSMFQRE ISSLMGGKFM QQMMNNSFEL PKFACRDKCL TEKVYDTPSN RLRKYKRSAS FNSRRVVLLF SVIMQKVWLD
201: FTIEK
001: MSDFFDEGKQ QFASVADGNA PLKYPSFKLP KSTFGDTGKH SAIDVFPLLV KEAAFPLKED RDIDTSLVQD VCTISVLPDE GNTIPQCTSH FTLLSFVKAL
101: LPSKNQMLID AQLNCQKTQN RINVLLGGTD SYQSCVVDIN VEKGNGGETV TSHDEVVASM KSESVHMQKV LQRQASLSTD KALSERCHDA PTNRWRRYKR
201: AASFDSRKIV ILFSILSSVG TLILIYLTLR VKQNGDNNNN SFNHM
101: LPSKNQMLID AQLNCQKTQN RINVLLGGTD SYQSCVVDIN VEKGNGGETV TSHDEVVASM KSESVHMQKV LQRQASLSTD KALSERCHDA PTNRWRRYKR
201: AASFDSRKIV ILFSILSSVG TLILIYLTLR VKQNGDNNNN SFNHM
Arabidopsis Description
AT4g39900/T5J17_70 [Source:UniProtKB/TrEMBL;Acc:Q93VM6]
SUBAcon: [peroxisome]
SUBAcon: [peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.