Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_10s0003g01830.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G39900.1 | VIT_10s0003g01830.t01 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra010648.1-P | Field mustard | cytosol | 42.75 | 47.46 |
| CDX90371 | Canola | cytosol | 42.75 | 47.46 |
| KRH31298 | Soybean | cytosol | 44.27 | 47.15 |
| CDY59444 | Canola | cytosol, nucleus, peroxisome | 41.98 | 46.61 |
| CDY56499 | Canola | cytosol | 37.4 | 44.55 |
| Solyc04g055250.2.1 | Tomato | cytosol, golgi, peroxisome | 32.44 | 44.27 |
| CDY63899 | Canola | peroxisome | 38.93 | 44.16 |
| AT4G39900.1 | Thale cress | peroxisome | 41.22 | 44.08 |
| Bra011824.1-P | Field mustard | cytosol, nucleus, peroxisome | 38.93 | 43.59 |
| KRG97575 | Soybean | cytosol | 41.6 | 43.43 |
| CDX69376 | Canola | nucleus | 38.93 | 43.22 |
| PGSC0003DMT400004734 | Potato | cytosol | 29.39 | 37.56 |
Protein Annotations
| ArrayExpress:VIT_00s0665g00030 | EMBL:FN595529 | EnsemblPlants:VIT_00s0665g00030.t01 | EnsemblPlantsGene:VIT_00s0665g00030 | EntrezGene:100853798 | EntrezGene:LOC100853798 |
| GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | PANTHER:PTHR34064 | PANTHER:PTHR34064:SF5 | ProteinID:CBI25775 |
| ProteinID:CBI25775.3 | RefSeq:XP_003635450 | RefSeq:XP_003635450.1 | SEG:seg | TMHMM:TMhelix | unigene:Vvi.13444 |
| UniParc:UPI0001BE2CF4 | UniProt:D7T5J2 | wikigene:100853798 | wikigene:LOC100853798 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chrUn:+:33821817..33826389
Molecular Weight (calculated)
29408.6 Da
IEP (calculated)
7.040
GRAVY (calculated)
-0.202
Length
262 amino acids
Sequence
(BLAST)
(BLAST)
001: MAINNCDEGK LYFQGIVDGS CNLPVSSCFQ LLKPGLDEIN PHCSLDVLPV LFDDASFPVR LKCPFHNSQG QDVYSISVLP DDGITNPQCE PQIAFLNFLE
101: VSNPFKSQMC PDTQLNCKSC VGLQMESSDT YSPCTVDMDI EKGSLETPKS NEETMGSLKT EGVLTHLQKA LRRQKSFQMG GKFLQLLMNH GLMLLKFTSR
201: DKPVTERVHD TPNNRWRKYK RAASFDSRKV VLFFSILSSM GTMILIYLTL RVRQIGDGLV HV
101: VSNPFKSQMC PDTQLNCKSC VGLQMESSDT YSPCTVDMDI EKGSLETPKS NEETMGSLKT EGVLTHLQKA LRRQKSFQMG GKFLQLLMNH GLMLLKFTSR
201: DKPVTERVHD TPNNRWRKYK RAASFDSRKV VLFFSILSSM GTMILIYLTL RVRQIGDGLV HV
001: MSDFFDEGKQ QFASVADGNA PLKYPSFKLP KSTFGDTGKH SAIDVFPLLV KEAAFPLKED RDIDTSLVQD VCTISVLPDE GNTIPQCTSH FTLLSFVKAL
101: LPSKNQMLID AQLNCQKTQN RINVLLGGTD SYQSCVVDIN VEKGNGGETV TSHDEVVASM KSESVHMQKV LQRQASLSTD KALSERCHDA PTNRWRRYKR
201: AASFDSRKIV ILFSILSSVG TLILIYLTLR VKQNGDNNNN SFNHM
101: LPSKNQMLID AQLNCQKTQN RINVLLGGTD SYQSCVVDIN VEKGNGGETV TSHDEVVASM KSESVHMQKV LQRQASLSTD KALSERCHDA PTNRWRRYKR
201: AASFDSRKIV ILFSILSSVG TLILIYLTLR VKQNGDNNNN SFNHM
Arabidopsis Description
AT4g39900/T5J17_70 [Source:UniProtKB/TrEMBL;Acc:Q93VM6]
SUBAcon: [peroxisome]
SUBAcon: [peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.