CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH11076
KRH21197
KRH42923
KRH42926
KRH45251
KRH59035
KRH59036

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G39900.1	KRH11076	AT4G19030.1	21798944
AT4G39900.1	KRH21197	AT4G19030.1	21798944
AT4G39900.1	KRH42923	AT4G19030.1	21798944
AT4G39900.1	KRH42926	AT4G19030.1	21798944
AT4G39900.1	KRH45251	AT4G19030.1	21798944
AT4G39900.1	KRH59035	AT4G19030.1	21798944
AT4G39900.1	KRH59036	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH31298	Soybean	cytosol	86.85	88.62
VIT_00s0665g00030.t01	Wine grape	cytosol, nucleus, plasma membrane	43.43	41.6
CDY56499	Canola	cytosol	33.86	38.64
Bra010648.1-P	Field mustard	cytosol	36.26	38.56
CDX90371	Canola	cytosol	36.26	38.56
CDY59444	Canola	cytosol, nucleus, peroxisome	35.86	38.14
CDY63899	Canola	peroxisome	35.06	38.1
Bra011824.1-P	Field mustard	cytosol, nucleus, peroxisome	35.06	37.61
CDX69376	Canola	nucleus	35.06	37.29
AT4G39900.1	Thale cress	peroxisome	34.66	35.51
Solyc04g055250.2.1	Tomato	cytosol, golgi, peroxisome	27.09	35.42
PGSC0003DMT400004734	Potato	cytosol	22.31	27.32

Protein Annotations

EMBL:ACUP02010800	EnsemblPlants:KRG97575	EnsemblPlantsGene:GLYMA_18G016900	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR34064	PANTHER:PTHR34064:SF5	ProteinID:KRG97575	ProteinID:KRG97575.1	TMHMM:TMhelix	UniParc:UPI00023D9EAA
UniProt:I1MYR6	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:+:1209141..1213043

Molecular Weight (calculated)

27935.4 Da

IEP (calculated)

7.905

GRAVY (calculated)

-0.299

Length

251 amino acids

Sequence
(BLAST)

001: MHGLSSMLFR SRKKEHQIRE FVDGNGNVAV GLKLHNKPSN DGLNRQFPLE IPPILFEETS LPAGLHGSHT KDVYSISVLP EEDENANCAS PLPFLSILGV
101: PNQVKSPMCL DDPINCQNCI DFQMKNEGVY SQCIIDIPSV NGNSVSPESY EEAVEGFKTG NSPTSVLWRE SSFKAGKLMQ SLVNVSNPRD KPVSEKLHDL
201: PSNRWRKYKR AASFDSRKVA LLFSILSSFG TLVLIYLTLR VRQRADGFAL I

Best Arabidopsis Sequence Match ( AT4G39900.1 )
(BLAST)

001: MSDFFDEGKQ QFASVADGNA PLKYPSFKLP KSTFGDTGKH SAIDVFPLLV KEAAFPLKED RDIDTSLVQD VCTISVLPDE GNTIPQCTSH FTLLSFVKAL
101: LPSKNQMLID AQLNCQKTQN RINVLLGGTD SYQSCVVDIN VEKGNGGETV TSHDEVVASM KSESVHMQKV LQRQASLSTD KALSERCHDA PTNRWRRYKR
201: AASFDSRKIV ILFSILSSVG TLILIYLTLR VKQNGDNNNN SFNHM

Arabidopsis Description

AT4g39900/T5J17_70 [Source:UniProtKB/TrEMBL;Acc:Q93VM6]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.