Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, golgi, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc02g071920.2.1 | |
| Solyc03g005980.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G39900.1 | Solyc02g071920.2.1 | AT4G19030.1 | 21798944 |
| AT4G39900.1 | Solyc03g005980.2.1 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400004734 | Potato | cytosol | 81.77 | 76.59 |
| VIT_00s0665g00030.t01 | Wine grape | cytosol, nucleus, plasma membrane | 44.27 | 32.44 |
| KRH31298 | Soybean | cytosol | 38.54 | 30.08 |
| CDX69376 | Canola | nucleus | 33.33 | 27.12 |
| KRG97575 | Soybean | cytosol | 35.42 | 27.09 |
| CDY56499 | Canola | cytosol | 30.73 | 26.82 |
| Bra010648.1-P | Field mustard | cytosol | 32.81 | 26.69 |
| CDX90371 | Canola | cytosol | 32.81 | 26.69 |
| CDY63899 | Canola | peroxisome | 31.77 | 26.41 |
| CDY59444 | Canola | cytosol, nucleus, peroxisome | 32.29 | 26.27 |
| Bra011824.1-P | Field mustard | cytosol, nucleus, peroxisome | 31.77 | 26.07 |
| AT4G39900.1 | Thale cress | peroxisome | 32.29 | 25.31 |
Protein Annotations
| EnsemblPlants:Solyc04g055250.2.1 | EnsemblPlantsGene:Solyc04g055250.2 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | PANTHER:PTHR34064 |
| PANTHER:PTHR34064:SF5 | TMHMM:TMhelix | UniParc:UPI0002765C58 | UniProt:K4BSS2 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr4:-:53876975..53883645
Molecular Weight (calculated)
21678.1 Da
IEP (calculated)
8.303
GRAVY (calculated)
-0.395
Length
192 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVNSSQEQS QDSLNFVKLP DEGTKGPLCE SHLDMLNLKT QISMDALSNG GNHANLKNDS LDAYGSYCLA IDIDKRKFDA PKSTEEMNGN VKMDDYVSSM
101: FQREISSLMG GKFMQQMMNN SFELPKFACK DKFLTEKVYD TPSNRLRKYK RSASFNSRRV VLLFSVMSCM GTIVLIYLTL RVRMSGDWAA NV
101: FQREISSLMG GKFMQQMMNN SFELPKFACK DKFLTEKVYD TPSNRLRKYK RSASFNSRRV VLLFSVMSCM GTIVLIYLTL RVRMSGDWAA NV
001: MSDFFDEGKQ QFASVADGNA PLKYPSFKLP KSTFGDTGKH SAIDVFPLLV KEAAFPLKED RDIDTSLVQD VCTISVLPDE GNTIPQCTSH FTLLSFVKAL
101: LPSKNQMLID AQLNCQKTQN RINVLLGGTD SYQSCVVDIN VEKGNGGETV TSHDEVVASM KSESVHMQKV LQRQASLSTD KALSERCHDA PTNRWRRYKR
201: AASFDSRKIV ILFSILSSVG TLILIYLTLR VKQNGDNNNN SFNHM
101: LPSKNQMLID AQLNCQKTQN RINVLLGGTD SYQSCVVDIN VEKGNGGETV TSHDEVVASM KSESVHMQKV LQRQASLSTD KALSERCHDA PTNRWRRYKR
201: AASFDSRKIV ILFSILSSVG TLILIYLTLR VKQNGDNNNN SFNHM
Arabidopsis Description
AT4g39900/T5J17_70 [Source:UniProtKB/TrEMBL;Acc:Q93VM6]
SUBAcon: [peroxisome]
SUBAcon: [peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.