CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX78905
CDX98596
CDX99411
CDY01565

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G39900.1	CDX78905	AT4G19030.1	21798944
AT4G39900.1	CDX98596	AT4G19030.1	21798944
AT4G39900.1	CDX99411	AT4G19030.1	21798944
AT4G39900.1	CDY01565	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90371	Canola	cytosol	97.03	97.03
AT4G39900.1	Thale cress	peroxisome	84.75	81.63
CDX69376	Canola	nucleus	77.97	77.97
CDY63899	Canola	peroxisome	76.27	77.92
CDY56499	Canola	cytosol	72.46	77.73
VIT_00s0665g00030.t01	Wine grape	cytosol, nucleus, plasma membrane	46.61	41.98
KRH31298	Soybean	cytosol	42.37	40.65
KRG97575	Soybean	cytosol	38.14	35.86
Solyc04g055250.2.1	Tomato	cytosol, golgi, peroxisome	26.27	32.29
PGSC0003DMT400004734	Potato	cytosol	23.31	26.83

Protein Annotations

EnsemblPlants:CDY59444	EnsemblPlantsGene:GSBRNA2T00026086001	GO:A0A078J803	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR34064	PANTHER:PTHR34064:SF5	ProteinID:CDY59444	ProteinID:CDY59444.1	TMHMM:TMhelix	UniParc:UPI0004EE73F8
UniProt:A0A078J803	MapMan:35.2	:	:	:	:

Description

BnaC03g76520DBnaC03g76520D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J803]

Coordinates

chrLK033763:-:45592..47615

Molecular Weight (calculated)

25881.0 Da

IEP (calculated)

8.733

GRAVY (calculated)

-0.212

Length

236 amino acids

Sequence
(BLAST)

001: MAAATGEGGK QQFPSVADGN GNAPVKYPSF KAPKLSFSDG PKHNSIDVFP LLVKEADHGI KNSLVQDVCT ISVLPDEGNT IPQCTSQFTL LSFVKTLFPS
101: KNHMLIDAQL NCQKTQNRIN VLLGGTDSYQ SCVVDINVEK GNGAEAEEVV ASLKSESVHM QKVLQRQASL STDKAISERC HDAPTNRWRR YKRAASFDSR
201: KIVILFSILS SVGTLILIYL TLRVRLINGD NSFNHM

Best Arabidopsis Sequence Match ( AT4G39900.1 )
(BLAST)

001: MSDFFDEGKQ QFASVADGNA PLKYPSFKLP KSTFGDTGKH SAIDVFPLLV KEAAFPLKED RDIDTSLVQD VCTISVLPDE GNTIPQCTSH FTLLSFVKAL
101: LPSKNQMLID AQLNCQKTQN RINVLLGGTD SYQSCVVDIN VEKGNGGETV TSHDEVVASM KSESVHMQKV LQRQASLSTD KALSERCHDA PTNRWRRYKR
201: AASFDSRKIV ILFSILSSVG TLILIYLTLR VKQNGDNNNN SFNHM

Arabidopsis Description

AT4g39900/T5J17_70 [Source:UniProtKB/TrEMBL;Acc:Q93VM6]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.