CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

nucleus 1
peroxisome 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX78905
CDX98596
CDX99411
CDY01565

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G39900.1	CDX78905	AT4G19030.1	21798944
AT4G39900.1	CDX98596	AT4G19030.1	21798944
AT4G39900.1	CDX99411	AT4G19030.1	21798944
AT4G39900.1	CDY01565	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY56499	Canola	cytosol	95.24	100.0
Bra011824.1-P	Field mustard	cytosol, nucleus, peroxisome	100.0	98.72
CDX69376	Canola	nucleus	91.34	89.41
CDX90371	Canola	cytosol	79.22	77.54
CDY59444	Canola	cytosol, nucleus, peroxisome	77.92	76.27
AT4G39900.1	Thale cress	peroxisome	79.65	75.1
VIT_00s0665g00030.t01	Wine grape	cytosol, nucleus, plasma membrane	44.16	38.93
KRH31298	Soybean	cytosol	41.13	38.62
KRG97575	Soybean	cytosol	38.1	35.06
Solyc04g055250.2.1	Tomato	cytosol, golgi, peroxisome	26.41	31.77
PGSC0003DMT400004734	Potato	cytosol	24.24	27.32

Protein Annotations

EnsemblPlants:CDY63899	EnsemblPlantsGene:GSBRNA2T00039724001	GO:A0A078JCT3	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR34064	PANTHER:PTHR34064:SF5	ProteinID:CDY63899	ProteinID:CDY63899.1	TMHMM:TMhelix	UniParc:UPI0004EE8D20
UniProt:A0A078JCT3	MapMan:35.2	:	:	:	:

Description

BnaA01g34640DBnaA01g34640D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JCT3]

Coordinates

chrLK034365:+:21714..23508

Molecular Weight (calculated)

25540.5 Da

IEP (calculated)

8.479

GRAVY (calculated)

-0.367

Length

231 amino acids

Sequence
(BLAST)

001: MASTGEGRKQ QFASGADGNA PLKYPTFKAT PPKPSLTDTL IDVSPLLAKE EETAFPLRDD RPLVQDVCTI SVLPDEGNPV PQCTSQFTLF SFVKALLPSK
101: NQMFIDAQLN CQKTQNRINV LLGGTDSYQS CVVDINVEKG NDGEAAGNVK SESVHMQKVL QRQASMTTDK AISDRCHDAP TNRWRRYKRA ASFDSRKIVI
201: LFSILSSVGT LILIYLTLRV RQNGDNSFNH M

Best Arabidopsis Sequence Match ( AT4G39900.1 )
(BLAST)

001: MSDFFDEGKQ QFASVADGNA PLKYPSFKLP KSTFGDTGKH SAIDVFPLLV KEAAFPLKED RDIDTSLVQD VCTISVLPDE GNTIPQCTSH FTLLSFVKAL
101: LPSKNQMLID AQLNCQKTQN RINVLLGGTD SYQSCVVDIN VEKGNGGETV TSHDEVVASM KSESVHMQKV LQRQASLSTD KALSERCHDA PTNRWRRYKR
201: AASFDSRKIV ILFSILSSVG TLILIYLTLR VKQNGDNNNN SFNHM

Arabidopsis Description

AT4g39900/T5J17_70 [Source:UniProtKB/TrEMBL;Acc:Q93VM6]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.