Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- peroxisome 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G39900.1 | CDX78905 | AT4G19030.1 | 21798944 |
| AT4G39900.1 | CDX98596 | AT4G19030.1 | 21798944 |
| AT4G39900.1 | CDX99411 | AT4G19030.1 | 21798944 |
| AT4G39900.1 | CDY01565 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY56499 | Canola | cytosol | 85.17 | 91.36 |
| CDY63899 | Canola | peroxisome | 89.41 | 91.34 |
| CDX90371 | Canola | cytosol | 79.24 | 79.24 |
| CDY59444 | Canola | cytosol, nucleus, peroxisome | 77.97 | 77.97 |
| AT4G39900.1 | Thale cress | peroxisome | 80.08 | 77.14 |
| VIT_00s0665g00030.t01 | Wine grape | cytosol, nucleus, plasma membrane | 43.22 | 38.93 |
| KRH31298 | Soybean | cytosol | 40.25 | 38.62 |
| KRG97575 | Soybean | cytosol | 37.29 | 35.06 |
| Solyc04g055250.2.1 | Tomato | cytosol, golgi, peroxisome | 27.12 | 33.33 |
| PGSC0003DMT400004734 | Potato | cytosol | 23.73 | 27.32 |
Protein Annotations
| EnsemblPlants:CDX69376 | EnsemblPlantsGene:GSBRNA2T00131231001 | GO:A0A078BX35 | PANTHER:PTHR34064 | PANTHER:PTHR34064:SF5 | ProteinID:CDX69376 |
| ProteinID:CDX69376.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EF323B | MapMan:35.2 | : |
Description
BnaC01g00770D
Coordinates
chrLK031789:+:4443711..4445300
Molecular Weight (calculated)
25906.7 Da
IEP (calculated)
6.127
GRAVY (calculated)
-0.389
Length
236 amino acids
Sequence
(BLAST)
(BLAST)
001: MASTGEEGRK QQFASAADGN APLKYPSFKS PPKPSLTDTV IDVSPEEEEE TAFPLGEEDR PLVQDVCTIS VLPDEGNTVP PQCTSQFTLL SFVKALLPSK
101: NQMFIDAQLN CQKTQNRINV LLGGTDSYQS CVVDINVEKG NGGEAHDGGV VGNVKSESVH MQKVLQRQAS MTTDKAISER CHDAPANRWR RYKRAASFDS
201: RKIVILFSIL SSVGTLILIY LTLRVRQSGD NSFNHM
101: NQMFIDAQLN CQKTQNRINV LLGGTDSYQS CVVDINVEKG NGGEAHDGGV VGNVKSESVH MQKVLQRQAS MTTDKAISER CHDAPANRWR RYKRAASFDS
201: RKIVILFSIL SSVGTLILIY LTLRVRQSGD NSFNHM
001: MSDFFDEGKQ QFASVADGNA PLKYPSFKLP KSTFGDTGKH SAIDVFPLLV KEAAFPLKED RDIDTSLVQD VCTISVLPDE GNTIPQCTSH FTLLSFVKAL
101: LPSKNQMLID AQLNCQKTQN RINVLLGGTD SYQSCVVDIN VEKGNGGETV TSHDEVVASM KSESVHMQKV LQRQASLSTD KALSERCHDA PTNRWRRYKR
201: AASFDSRKIV ILFSILSSVG TLILIYLTLR VKQNGDNNNN SFNHM
101: LPSKNQMLID AQLNCQKTQN RINVLLGGTD SYQSCVVDIN VEKGNGGETV TSHDEVVASM KSESVHMQKV LQRQASLSTD KALSERCHDA PTNRWRRYKR
201: AASFDSRKIV ILFSILSSVG TLILIYLTLR VKQNGDNNNN SFNHM
Arabidopsis Description
AT4g39900/T5J17_70 [Source:UniProtKB/TrEMBL;Acc:Q93VM6]
SUBAcon: [peroxisome]
SUBAcon: [peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.